Name | Number of supported studies | Average coverage | |
---|---|---|---|
macrophage | 28 studies | 28% ± 12% | |
fibroblast | 18 studies | 23% ± 8% | |
conventional dendritic cell | 16 studies | 27% ± 8% | |
dendritic cell | 15 studies | 30% ± 11% | |
classical monocyte | 15 studies | 29% ± 12% | |
monocyte | 12 studies | 31% ± 12% | |
pericyte | 9 studies | 25% ± 9% | |
astrocyte | 9 studies | 32% ± 17% | |
glutamatergic neuron | 8 studies | 37% ± 24% | |
myeloid cell | 8 studies | 32% ± 11% | |
GABAergic neuron | 7 studies | 35% ± 20% | |
endothelial cell | 7 studies | 30% ± 11% | |
microglial cell | 7 studies | 29% ± 9% | |
adipocyte | 7 studies | 24% ± 4% | |
oligodendrocyte | 7 studies | 27% ± 13% | |
oligodendrocyte precursor cell | 7 studies | 27% ± 10% | |
interneuron | 5 studies | 43% ± 26% | |
mononuclear phagocyte | 4 studies | 28% ± 6% | |
connective tissue cell | 4 studies | 20% ± 2% | |
cardiac muscle cell | 4 studies | 17% ± 1% | |
mesothelial cell | 4 studies | 34% ± 14% | |
alveolar macrophage | 4 studies | 24% ± 5% | |
neutrophil | 3 studies | 25% ± 9% | |
non-classical monocyte | 3 studies | 22% ± 3% | |
epithelial cell | 3 studies | 26% ± 2% | |
mast cell | 3 studies | 26% ± 12% | |
basal cell | 3 studies | 26% ± 9% | |
myofibroblast cell | 3 studies | 17% ± 1% | |
tissue-resident macrophage | 3 studies | 30% ± 7% | |
smooth muscle cell | 3 studies | 27% ± 15% | |
ciliated cell | 3 studies | 34% ± 13% | |
granule cell | 3 studies | 24% ± 11% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 5227.21 | 459 / 459 | 98% | 6.18 | 1101 / 1118 |
lung | 100% | 4352.04 | 578 / 578 | 97% | 6.86 | 1122 / 1155 |
uterus | 100% | 2906.75 | 170 / 170 | 96% | 7.89 | 439 / 459 |
thymus | 98% | 1922.71 | 643 / 653 | 97% | 3.90 | 587 / 605 |
esophagus | 100% | 2525.79 | 1440 / 1445 | 95% | 6.63 | 174 / 183 |
ovary | 100% | 3509.49 | 180 / 180 | 92% | 3.05 | 395 / 430 |
kidney | 94% | 1832.99 | 84 / 89 | 95% | 5.18 | 854 / 901 |
prostate | 98% | 2527.22 | 241 / 245 | 90% | 2.24 | 450 / 502 |
bladder | 100% | 2795.81 | 21 / 21 | 87% | 4.85 | 436 / 504 |
adrenal gland | 100% | 2287.49 | 258 / 258 | 80% | 1.71 | 184 / 230 |
intestine | 99% | 2345.32 | 956 / 966 | 76% | 2.47 | 398 / 527 |
skin | 100% | 6094.38 | 1807 / 1809 | 68% | 2.34 | 322 / 472 |
stomach | 77% | 1276.42 | 276 / 359 | 82% | 3.15 | 235 / 286 |
brain | 30% | 312.46 | 785 / 2642 | 99% | 3.75 | 696 / 705 |
pancreas | 16% | 168.97 | 52 / 328 | 94% | 5.35 | 168 / 178 |
adipose | 100% | 7556.30 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 3938.72 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 3614.41 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 8.11 | 44 / 45 |
liver | 64% | 754.35 | 144 / 226 | 32% | 0.99 | 131 / 406 |
lymph node | 0% | 0 | 0 / 0 | 93% | 3.90 | 27 / 29 |
heart | 85% | 1742.50 | 729 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 73% | 2487.89 | 679 / 929 | 0% | 0 | 0 / 0 |
muscle | 72% | 894.90 | 577 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 15% | 0.20 | 12 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0030208 | Biological process | dermatan sulfate biosynthetic process |
GO_0015012 | Biological process | heparan sulfate proteoglycan biosynthetic process |
GO_0030205 | Biological process | dermatan sulfate metabolic process |
GO_0030206 | Biological process | chondroitin sulfate biosynthetic process |
GO_0030204 | Biological process | chondroitin sulfate metabolic process |
GO_0000139 | Cellular component | Golgi membrane |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0030659 | Cellular component | cytoplasmic vesicle membrane |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0047757 | Molecular function | chondroitin-glucuronate 5-epimerase activity |
GO_0046872 | Molecular function | metal ion binding |
Gene name | DSE |
Protein name | Dermatan sulfate epimerase Dermatan-sulfate epimerase (DS epimerase) (EC 5.1.3.19) (Chondroitin-glucuronate 5-epimerase) (Squamous cell carcinoma antigen recognized by T-cells 2) (SART-2) |
Synonyms | SART2 |
Description | FUNCTION: Converts D-glucuronic acid to L-iduronic acid (IdoUA) residues. Plays an important role in the biosynthesis of the glycosaminoglycan/mucopolysaccharide dermatan sulfate. . |
Accessions | A0A2R8YE23 A0A2U3TZJ0 A0A2R8Y4N7 ENST00000643175.1 ENST00000452085.7 Q9UL01 ENST00000359564.3 X6REM1 ENST00000644252.3 ENST00000331677.7 ENST00000645988.1 A0A2R8Y6Y4 ENST00000646710.1 ENST00000647244.1 ENST00000430252.6 |