Name | Number of supported studies | Average coverage | |
---|---|---|---|
glutamatergic neuron | 13 studies | 46% ± 25% | |
endothelial cell | 12 studies | 26% ± 9% | |
GABAergic neuron | 11 studies | 44% ± 24% | |
oligodendrocyte | 11 studies | 34% ± 13% | |
oligodendrocyte precursor cell | 10 studies | 40% ± 19% | |
astrocyte | 10 studies | 35% ± 17% | |
microglial cell | 9 studies | 28% ± 11% | |
adipocyte | 6 studies | 25% ± 4% | |
fibroblast | 6 studies | 23% ± 8% | |
macrophage | 5 studies | 30% ± 9% | |
interneuron | 5 studies | 61% ± 24% | |
neuron | 4 studies | 46% ± 7% | |
epithelial cell | 4 studies | 30% ± 18% | |
cardiac muscle cell | 4 studies | 20% ± 2% | |
amacrine cell | 4 studies | 29% ± 13% | |
retina horizontal cell | 4 studies | 29% ± 14% | |
retinal cone cell | 4 studies | 33% ± 13% | |
retinal rod cell | 4 studies | 36% ± 8% | |
endothelial cell of lymphatic vessel | 4 studies | 18% ± 2% | |
pericyte | 4 studies | 22% ± 6% | |
GABAergic amacrine cell | 3 studies | 31% ± 13% | |
glycinergic amacrine cell | 3 studies | 28% ± 8% | |
ciliated cell | 3 studies | 26% ± 8% | |
hepatocyte | 3 studies | 30% ± 15% | |
alveolar macrophage | 3 studies | 22% ± 6% | |
monocyte | 3 studies | 22% ± 0% | |
type I pneumocyte | 3 studies | 21% ± 5% | |
type II pneumocyte | 3 studies | 19% ± 5% | |
lymphocyte | 3 studies | 22% ± 7% | |
basal cell | 3 studies | 31% ± 19% | |
smooth muscle cell | 3 studies | 21% ± 1% | |
granule cell | 3 studies | 38% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2268.00 | 1445 / 1445 | 100% | 9.84 | 183 / 183 |
brain | 99% | 3045.97 | 2611 / 2642 | 99% | 12.21 | 695 / 705 |
thymus | 100% | 3423.63 | 653 / 653 | 96% | 10.07 | 582 / 605 |
stomach | 100% | 1708.68 | 359 / 359 | 96% | 7.10 | 274 / 286 |
breast | 100% | 2433.66 | 459 / 459 | 95% | 8.03 | 1064 / 1118 |
pancreas | 100% | 1615.35 | 327 / 328 | 94% | 6.10 | 168 / 178 |
intestine | 100% | 2403.83 | 966 / 966 | 94% | 6.25 | 493 / 527 |
lung | 100% | 2081.94 | 577 / 578 | 92% | 5.44 | 1063 / 1155 |
kidney | 100% | 1792.58 | 89 / 89 | 91% | 6.63 | 823 / 901 |
prostate | 100% | 2741.78 | 245 / 245 | 89% | 5.99 | 447 / 502 |
adrenal gland | 100% | 1680.24 | 258 / 258 | 87% | 6.36 | 200 / 230 |
bladder | 100% | 2298.05 | 21 / 21 | 87% | 5.12 | 436 / 504 |
uterus | 100% | 2974.64 | 170 / 170 | 84% | 5.08 | 387 / 459 |
skin | 100% | 3031.35 | 1805 / 1809 | 79% | 3.94 | 373 / 472 |
ovary | 100% | 3182.94 | 180 / 180 | 66% | 2.84 | 283 / 430 |
liver | 96% | 946.71 | 217 / 226 | 46% | 1.79 | 188 / 406 |
spleen | 100% | 2156.54 | 241 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2494.27 | 1334 / 1335 | 0% | 0 | 0 / 0 |
adipose | 100% | 1892.21 | 1201 / 1204 | 0% | 0 | 0 / 0 |
muscle | 99% | 1677.15 | 797 / 803 | 0% | 0 | 0 / 0 |
heart | 95% | 1492.50 | 815 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 82% | 5.11 | 37 / 45 |
lymph node | 0% | 0 | 0 / 0 | 55% | 3.27 | 16 / 29 |
eye | 0% | 0 | 0 / 0 | 50% | 2.12 | 40 / 80 |
peripheral blood | 35% | 708.24 | 325 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0015031 | Biological process | protein transport |
GO_0006895 | Biological process | Golgi to endosome transport |
GO_0005802 | Cellular component | trans-Golgi network |
GO_0000139 | Cellular component | Golgi membrane |
GO_0005798 | Cellular component | Golgi-associated vesicle |
GO_0005768 | Cellular component | endosome |
GO_0005829 | Cellular component | cytosol |
Gene name | DOP1A |
Protein name | DOPEY1 protein DOP1 leucine zipper like protein A Protein dopey-1 |
Synonyms | DOPEY1 KIAA1117 |
Description | FUNCTION: May be involved in protein traffic between late Golgi and early endosomes. . |
Accessions | Q5JWR5 ENST00000369739.7 ENST00000349129.7 Q5TA12 ENST00000237163.9 ENST00000604380.1 S4R3Y1 B2RWN9 |