Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 11 studies | 27% ± 12% | |
macrophage | 10 studies | 35% ± 14% | |
microglial cell | 10 studies | 34% ± 11% | |
astrocyte | 7 studies | 30% ± 13% | |
oligodendrocyte | 7 studies | 26% ± 9% | |
oligodendrocyte precursor cell | 6 studies | 28% ± 11% | |
myeloid cell | 6 studies | 25% ± 7% | |
retina horizontal cell | 6 studies | 29% ± 16% | |
dendritic cell | 6 studies | 19% ± 3% | |
interneuron | 5 studies | 35% ± 22% | |
epithelial cell | 5 studies | 31% ± 9% | |
monocyte | 5 studies | 21% ± 5% | |
fibroblast | 5 studies | 23% ± 4% | |
GABAergic neuron | 4 studies | 45% ± 17% | |
glutamatergic neuron | 4 studies | 55% ± 20% | |
endothelial cell of lymphatic vessel | 4 studies | 23% ± 2% | |
smooth muscle cell | 4 studies | 17% ± 1% | |
classical monocyte | 3 studies | 21% ± 1% | |
neuron | 3 studies | 28% ± 9% | |
pericyte | 3 studies | 20% ± 4% | |
mast cell | 3 studies | 20% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 4473.56 | 1445 / 1445 | 100% | 34.99 | 183 / 183 |
lung | 100% | 4389.03 | 578 / 578 | 100% | 23.81 | 1155 / 1155 |
ovary | 100% | 4247.22 | 180 / 180 | 100% | 17.67 | 430 / 430 |
breast | 100% | 4064.00 | 459 / 459 | 100% | 30.84 | 1117 / 1118 |
bladder | 100% | 4943.62 | 21 / 21 | 100% | 21.67 | 503 / 504 |
uterus | 100% | 5407.23 | 170 / 170 | 100% | 26.41 | 457 / 459 |
stomach | 100% | 3042.97 | 359 / 359 | 99% | 21.59 | 284 / 286 |
intestine | 100% | 5245.56 | 966 / 966 | 99% | 18.79 | 523 / 527 |
kidney | 100% | 3073.72 | 89 / 89 | 99% | 24.73 | 894 / 901 |
thymus | 100% | 3930.02 | 653 / 653 | 99% | 21.50 | 599 / 605 |
prostate | 100% | 3708.69 | 245 / 245 | 99% | 18.77 | 497 / 502 |
skin | 100% | 4973.53 | 1808 / 1809 | 98% | 39.87 | 464 / 472 |
brain | 98% | 2068.91 | 2585 / 2642 | 100% | 19.71 | 705 / 705 |
adrenal gland | 100% | 3753.22 | 258 / 258 | 97% | 15.46 | 223 / 230 |
pancreas | 95% | 1575.98 | 313 / 328 | 99% | 21.07 | 176 / 178 |
liver | 95% | 1387.05 | 215 / 226 | 91% | 10.66 | 369 / 406 |
adipose | 100% | 4589.37 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 5897.80 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 18.99 | 29 / 29 |
spleen | 100% | 4035.26 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 34.03 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 9.78 | 1 / 1 |
muscle | 100% | 2872.39 | 801 / 803 | 0% | 0 | 0 / 0 |
heart | 95% | 2572.38 | 819 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 93% | 30.04 | 74 / 80 |
peripheral blood | 83% | 2429.09 | 769 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_2000641 | Biological process | regulation of early endosome to late endosome transport |
GO_0015031 | Biological process | protein transport |
GO_1902954 | Biological process | regulation of early endosome to recycling endosome transport |
GO_0006898 | Biological process | receptor-mediated endocytosis |
GO_0007032 | Biological process | endosome organization |
GO_0001649 | Biological process | osteoblast differentiation |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0010008 | Cellular component | endosome membrane |
GO_0031901 | Cellular component | early endosome membrane |
GO_0030667 | Cellular component | secretory granule membrane |
GO_0035577 | Cellular component | azurophil granule membrane |
GO_0070062 | Cellular component | extracellular exosome |
GO_0071203 | Cellular component | WASH complex |
GO_0005829 | Cellular component | cytosol |
GO_0005886 | Cellular component | plasma membrane |
GO_0005765 | Cellular component | lysosomal membrane |
GO_0016020 | Cellular component | membrane |
GO_0005515 | Molecular function | protein binding |
Gene name | DNAJC13 |
Protein name | DnaJ homolog subfamily C member 13 (Required for receptor-mediated endocytosis 8) (RME-8) DNAJC13 protein DnaJ heat shock protein family (Hsp40) member C13 |
Synonyms | RME8 KIAA0678 |
Description | FUNCTION: Involved in membrane trafficking through early endosomes, such as the early endosome to recycling endosome transport implicated in the recycling of transferrin and the early endosome to late endosome transport implicated in degradation of EGF and EGFR . Involved in the regulation of endosomal membrane tubulation and regulates the dynamics of SNX1 on the endosomal membrane; via association with WASHC2 may link the WASH complex to the retromer SNX-BAR subcomplex . . |
Accessions | ENST00000260818.11 H0YA63 O75165 ENST00000509279.1 ENST00000650455.1 A0A3B3IRM0 H0Y8Q2 Q0D2M7 ENST00000506813.1 |