Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 4 studies | 28% ± 8% | |
oligodendrocyte | 4 studies | 23% ± 6% | |
classical monocyte | 3 studies | 18% ± 3% | |
endothelial cell | 3 studies | 22% ± 3% | |
GABAergic neuron | 3 studies | 28% ± 5% | |
glutamatergic neuron | 3 studies | 36% ± 4% | |
dendritic cell | 3 studies | 24% ± 8% | |
transit amplifying cell | 3 studies | 22% ± 10% | |
astrocyte | 3 studies | 30% ± 6% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 30% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2839.17 | 1445 / 1445 | 100% | 27.31 | 183 / 183 |
lung | 100% | 2809.76 | 578 / 578 | 100% | 22.84 | 1155 / 1155 |
stomach | 100% | 2153.65 | 359 / 359 | 100% | 21.16 | 286 / 286 |
breast | 100% | 3127.00 | 459 / 459 | 100% | 25.76 | 1116 / 1118 |
intestine | 100% | 2732.22 | 966 / 966 | 100% | 20.40 | 525 / 527 |
bladder | 100% | 2890.10 | 21 / 21 | 100% | 21.70 | 502 / 504 |
skin | 100% | 4277.54 | 1809 / 1809 | 100% | 26.44 | 470 / 472 |
uterus | 100% | 3078.68 | 170 / 170 | 100% | 22.52 | 457 / 459 |
thymus | 100% | 2731.38 | 653 / 653 | 99% | 17.92 | 601 / 605 |
prostate | 100% | 2625.93 | 245 / 245 | 99% | 15.40 | 498 / 502 |
ovary | 100% | 2306.76 | 180 / 180 | 99% | 14.07 | 426 / 430 |
brain | 98% | 1446.12 | 2594 / 2642 | 100% | 18.58 | 705 / 705 |
pancreas | 99% | 1389.16 | 325 / 328 | 99% | 19.34 | 176 / 178 |
kidney | 100% | 1931.06 | 89 / 89 | 97% | 14.50 | 878 / 901 |
liver | 100% | 1232.42 | 225 / 226 | 96% | 10.48 | 389 / 406 |
adrenal gland | 100% | 2262.34 | 258 / 258 | 92% | 11.33 | 211 / 230 |
adipose | 100% | 2956.03 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2760.14 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 19.63 | 29 / 29 |
spleen | 100% | 3238.73 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 25.06 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 8.25 | 1 / 1 |
muscle | 100% | 2107.20 | 801 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 17.81 | 79 / 80 |
heart | 99% | 1555.53 | 849 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 98% | 3021.32 | 911 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006396 | Biological process | RNA processing |
GO_0000398 | Biological process | mRNA splicing, via spliceosome |
GO_0008380 | Biological process | RNA splicing |
GO_0000390 | Biological process | spliceosomal complex disassembly |
GO_0005622 | Cellular component | intracellular anatomical structure |
GO_0005681 | Cellular component | spliceosomal complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0071007 | Cellular component | U2-type catalytic step 2 spliceosome |
GO_0016604 | Cellular component | nuclear body |
GO_0005829 | Cellular component | cytosol |
GO_0071013 | Cellular component | catalytic step 2 spliceosome |
GO_0005634 | Cellular component | nucleus |
GO_0003724 | Molecular function | RNA helicase activity |
GO_0042802 | Molecular function | identical protein binding |
GO_0008186 | Molecular function | ATP-dependent activity, acting on RNA |
GO_0005524 | Molecular function | ATP binding |
GO_0003723 | Molecular function | RNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0016887 | Molecular function | ATP hydrolysis activity |
Gene name | DHX8 |
Protein name | RNA helicase (EC 3.6.4.13) DEAH-box helicase 8 DHX8 protein ATP-dependent RNA helicase DHX8 (EC 3.6.4.13) (DEAH box protein 8) (RNA helicase HRH1) |
Synonyms | hCG_28537 DDX8 |
Description | FUNCTION: Involved in pre-mRNA splicing as component of the spliceosome . Facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome . . |
Accessions | Q86X36 K7EQH7 Q86YB2 F5H658 ENST00000262415.8 Q05CV4 Q14562 ENST00000540306.5 ENST00000650571.1 K7END7 ENST00000589898.2 K7EJH9 ENST00000592258.5 ENST00000587574.1 |