I. Expression across cell types
Name | Number of supported studies  | Average coverage | |
|---|---|---|---|
| endothelial cell | 4 studies | 17% ± 2% | |
| epithelial cell | 4 studies | 23% ± 9% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| endothelial cell | 4 studies | 17% ± 2% | |
| epithelial cell | 4 studies | 23% ± 9% |
Insufficient scRNA-seq data for expression of DHX38 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| esophagus | 100% | 4241.97 | 1445 / 1445 | 100% | 29.47 | 183 / 183 |
| skin | 100% | 5290.31 | 1809 / 1809 | 100% | 42.31 | 471 / 472 |
| lung | 100% | 4800.88 | 578 / 578 | 100% | 30.22 | 1152 / 1155 |
| intestine | 100% | 4705.45 | 966 / 966 | 99% | 32.09 | 524 / 527 |
| thymus | 100% | 4749.63 | 653 / 653 | 99% | 29.57 | 601 / 605 |
| bladder | 100% | 4359.57 | 21 / 21 | 99% | 32.37 | 500 / 504 |
| prostate | 100% | 4098.53 | 245 / 245 | 99% | 25.29 | 498 / 502 |
| breast | 100% | 5004.42 | 459 / 459 | 99% | 27.14 | 1109 / 1118 |
| pancreas | 100% | 2178.26 | 327 / 328 | 99% | 32.22 | 177 / 178 |
| uterus | 100% | 5327.12 | 170 / 170 | 99% | 33.81 | 455 / 459 |
| stomach | 100% | 3351.22 | 359 / 359 | 99% | 29.47 | 283 / 286 |
| kidney | 100% | 2987.40 | 89 / 89 | 99% | 29.92 | 889 / 901 |
| brain | 99% | 2534.58 | 2614 / 2642 | 100% | 45.08 | 702 / 705 |
| adrenal gland | 100% | 3172.81 | 258 / 258 | 97% | 24.15 | 222 / 230 |
| ovary | 100% | 5701.39 | 180 / 180 | 94% | 17.92 | 406 / 430 |
| liver | 99% | 1911.66 | 224 / 226 | 95% | 18.00 | 386 / 406 |
| adipose | 100% | 4912.74 | 1204 / 1204 | 0% | 0 | 0 / 0 |
| blood vessel | 100% | 4526.23 | 1335 / 1335 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 100% | 37.60 | 29 / 29 |
| muscle | 100% | 4238.72 | 803 / 803 | 0% | 0 | 0 / 0 |
| spleen | 100% | 5653.10 | 241 / 241 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 100% | 32.20 | 45 / 45 |
| ureter | 0% | 0 | 0 / 0 | 100% | 13.72 | 1 / 1 |
| eye | 0% | 0 | 0 / 0 | 99% | 30.44 | 79 / 80 |
| heart | 98% | 2774.21 | 848 / 861 | 0% | 0 | 0 / 0 |
| peripheral blood | 94% | 2734.81 | 870 / 929 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0000398 | Biological process | mRNA splicing, via spliceosome |
| GO_0071013 | Cellular component | catalytic step 2 spliceosome |
| GO_0005654 | Cellular component | nucleoplasm |
| GO_0005622 | Cellular component | intracellular anatomical structure |
| GO_0016020 | Cellular component | membrane |
| GO_0005681 | Cellular component | spliceosomal complex |
| GO_0005634 | Cellular component | nucleus |
| GO_0034458 | Molecular function | 3'-5' RNA helicase activity |
| GO_0005515 | Molecular function | protein binding |
| GO_0003724 | Molecular function | RNA helicase activity |
| GO_0016887 | Molecular function | ATP hydrolysis activity |
| GO_0005524 | Molecular function | ATP binding |
| GO_0003723 | Molecular function | RNA binding |
| Gene name | DHX38 |
| Protein name | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 (EC 3.6.4.13) (ATP-dependent RNA helicase DHX38) (DEAH box protein 38) DEAH-box helicase 38 RNA helicase (EC 3.6.4.13) |
| Synonyms | PRP16 KIAA0224 DDX38 hCG_33013 |
| Description | FUNCTION: Probable ATP-binding RNA helicase (Probable). Involved in pre-mRNA splicing as component of the spliceosome . . |
| Accessions | ENST00000579387.5 ENST00000566794.5 J3KRT1 ENST00000562774.1 J3KTG2 H3BV01 ENST00000268482.8 [Q92620-1] H3BMS7 H3BQT9 ENST00000567142.2 ENST00000566489.1 Q92620 J3KSA8 ENST00000563819.5 B4DM30 |
