Name | Number of supported studies | Average coverage | |
---|---|---|---|
smooth muscle cell | 23 studies | 49% ± 29% | |
myofibroblast cell | 8 studies | 53% ± 22% | |
cardiac muscle cell | 7 studies | 61% ± 23% | |
fibroblast | 7 studies | 27% ± 17% | |
mesothelial cell | 5 studies | 30% ± 11% | |
pericyte | 3 studies | 25% ± 6% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
heart | 4 studies | 35% ± 9% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 78% | 206931.04 | 190 / 245 | 99% | 1454.64 | 498 / 502 |
bladder | 81% | 451595.24 | 17 / 21 | 45% | 332.81 | 228 / 504 |
intestine | 70% | 440138.95 | 675 / 966 | 50% | 193.45 | 261 / 527 |
esophagus | 69% | 437728.91 | 995 / 1445 | 49% | 289.76 | 89 / 183 |
uterus | 79% | 176682.56 | 135 / 170 | 32% | 461.67 | 149 / 459 |
stomach | 40% | 158972.97 | 144 / 359 | 60% | 588.10 | 173 / 286 |
muscle | 100% | 880889.00 | 803 / 803 | 0% | 0 | 0 / 0 |
heart | 97% | 577328.59 | 838 / 861 | 0% | 0 | 0 / 0 |
blood vessel | 50% | 91748.27 | 663 / 1335 | 0% | 0 | 0 / 0 |
pancreas | 0% | 0 | 0 / 328 | 30% | 334.93 | 53 / 178 |
ovary | 6% | 6776.68 | 11 / 180 | 20% | 20.77 | 85 / 430 |
lung | 1% | 1530.99 | 7 / 578 | 17% | 224.20 | 195 / 1155 |
tonsil | 0% | 0 | 0 / 0 | 13% | 70.17 | 6 / 45 |
kidney | 0% | 0 | 0 / 89 | 10% | 10.10 | 94 / 901 |
skin | 1% | 1354.29 | 18 / 1809 | 7% | 25.64 | 34 / 472 |
adrenal gland | 0% | 355.45 | 1 / 258 | 7% | 7.07 | 17 / 230 |
adipose | 6% | 7797.56 | 68 / 1204 | 0% | 0 | 0 / 0 |
brain | 0% | 0 | 0 / 2642 | 5% | 2.90 | 37 / 705 |
breast | 1% | 616.88 | 3 / 459 | 4% | 7.68 | 42 / 1118 |
thymus | 1% | 610.81 | 5 / 653 | 3% | 3.48 | 20 / 605 |
lymph node | 0% | 0 | 0 / 0 | 3% | 1.11 | 1 / 29 |
liver | 0% | 0 | 0 / 226 | 1% | 2.59 | 6 / 406 |
peripheral blood | 1% | 723.73 | 7 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0006998 | Biological process | nuclear envelope organization |
GO_0007010 | Biological process | cytoskeleton organization |
GO_0006936 | Biological process | muscle contraction |
GO_0045109 | Biological process | intermediate filament organization |
GO_0060538 | Biological process | skeletal muscle organ development |
GO_0008016 | Biological process | regulation of heart contraction |
GO_0097512 | Cellular component | cardiac myofibril |
GO_0031594 | Cellular component | neuromuscular junction |
GO_0030018 | Cellular component | Z disc |
GO_0005916 | Cellular component | fascia adherens |
GO_0051286 | Cellular component | cell tip |
GO_0042383 | Cellular component | sarcolemma |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005635 | Cellular component | nuclear envelope |
GO_0005882 | Cellular component | intermediate filament |
GO_0005911 | Cellular component | cell-cell junction |
GO_0045111 | Cellular component | intermediate filament cytoskeleton |
GO_0005829 | Cellular component | cytosol |
GO_0014704 | Cellular component | intercalated disc |
GO_0005634 | Cellular component | nucleus |
GO_0005200 | Molecular function | structural constituent of cytoskeleton |
GO_0042802 | Molecular function | identical protein binding |
GO_0008092 | Molecular function | cytoskeletal protein binding |
GO_0005515 | Molecular function | protein binding |
Gene name | DES |
Protein name | Desmin |
Synonyms | tmp_locus_29 hCG_14764 |
Description | FUNCTION: Muscle-specific type III intermediate filament essential for proper muscular structure and function. Plays a crucial role in maintaining the structure of sarcomeres, inter-connecting the Z-disks and forming the myofibrils, linking them not only to the sarcolemmal cytoskeleton, but also to the nucleus and mitochondria, thus providing strength for the muscle fiber during activity . In adult striated muscle they form a fibrous network connecting myofibrils to each other and to the plasma membrane from the periphery of the Z-line structures . May act as a sarcomeric microtubule-anchoring protein: specifically associates with detyrosinated tubulin-alpha chains, leading to buckled microtubules and mechanical resistance to contraction. Required for nuclear membrane integrity, via anchoring at the cell tip and nuclear envelope, resulting in maintenance of microtubule-derived intracellular mechanical forces (By similarity). Contributes to the transcriptional regulation of the NKX2-5 gene in cardiac progenitor cells during a short period of cardiomyogenesis and in cardiac side population stem cells in the adult. Plays a role in maintaining an optimal conformation of nebulette (NEB) on heart muscle sarcomeres to bind and recruit cardiac alpha-actin (By similarity). . |
Accessions | Q5RLN2 L7RDA5 P17661 Q5RLN0 A0A7R6M6U0 Q5RLN1 ENST00000373960.4 Q53SB5 L7R9R4 |