Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 9808.93 | 1445 / 1445 | 100% | 72.44 | 183 / 183 |
liver | 100% | 7799.32 | 226 / 226 | 100% | 93.65 | 406 / 406 |
lung | 100% | 10180.11 | 578 / 578 | 100% | 91.99 | 1155 / 1155 |
ovary | 100% | 10539.58 | 180 / 180 | 100% | 120.33 | 430 / 430 |
prostate | 100% | 14001.77 | 245 / 245 | 100% | 178.41 | 502 / 502 |
stomach | 100% | 9015.42 | 359 / 359 | 100% | 86.31 | 286 / 286 |
thymus | 100% | 11147.89 | 653 / 653 | 100% | 155.40 | 605 / 605 |
skin | 100% | 7725.32 | 1809 / 1809 | 100% | 98.73 | 471 / 472 |
uterus | 100% | 11247.81 | 170 / 170 | 100% | 99.61 | 458 / 459 |
kidney | 100% | 9449.99 | 89 / 89 | 100% | 120.61 | 899 / 901 |
pancreas | 100% | 5683.69 | 327 / 328 | 100% | 121.21 | 178 / 178 |
intestine | 100% | 9574.95 | 966 / 966 | 100% | 96.96 | 525 / 527 |
bladder | 100% | 10882.10 | 21 / 21 | 99% | 92.20 | 501 / 504 |
breast | 100% | 10574.01 | 459 / 459 | 99% | 102.53 | 1110 / 1118 |
adrenal gland | 100% | 6899.90 | 258 / 258 | 97% | 56.95 | 223 / 230 |
brain | 90% | 2314.34 | 2386 / 2642 | 100% | 78.16 | 705 / 705 |
adipose | 100% | 10834.57 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 11548.12 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 135.90 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 81.45 | 29 / 29 |
spleen | 100% | 11788.29 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 100.14 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 108.19 | 1 / 1 |
heart | 100% | 5877.64 | 860 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 99% | 12350.39 | 922 / 929 | 0% | 0 | 0 / 0 |
muscle | 99% | 4064.44 | 794 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_2000134 | Biological process | negative regulation of G1/S transition of mitotic cell cycle |
GO_0001933 | Biological process | negative regulation of protein phosphorylation |
GO_0045665 | Biological process | negative regulation of neuron differentiation |
GO_0006470 | Biological process | protein dephosphorylation |
GO_0050768 | Biological process | negative regulation of neurogenesis |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0008420 | Molecular function | RNA polymerase II CTD heptapeptide repeat phosphatase activity |
GO_0005515 | Molecular function | protein binding |
GO_0017018 | Molecular function | myosin phosphatase activity |
GO_0046872 | Molecular function | metal ion binding |
Gene name | CTDSP1 |
Protein name | protein-serine/threonine phosphatase (EC 3.1.3.16) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 (EC 3.1.3.16) (Nuclear LIM interactor-interacting factor 3) (NLI-IF) (NLI-interacting factor 3) (Small C-terminal domain phosphatase 1) (SCP1) (Small CTD phosphatase 1) CTD small phosphatase 1 |
Synonyms | SCP1 NLIIF NIF3 |
Description | FUNCTION: Preferentially catalyzes the dephosphorylation of 'Ser-5' within the tandem 7 residue repeats in the C-terminal domain (CTD) of the largest RNA polymerase II subunit POLR2A. Negatively regulates RNA polymerase II transcription, possibly by controlling the transition from initiation/capping to processive transcript elongation. Recruited by REST to neuronal genes that contain RE-1 elements, leading to neuronal gene silencing in non-neuronal cells. . |
Accessions | ENST00000473420.6 ENST00000491064.6 ENST00000498160.6 ENST00000710839.1 ENST00000464255.2 ENST00000710838.1 ENST00000452977.6 ENST00000428361.6 ENST00000488627.6 ENST00000710828.1 ENST00000273062.7 [Q9GZU7-1] A0AA34QW09 ENST00000443891.6 ENST00000710837.1 [Q9GZU7-2] A0AA34QVU0 H7C270 Q9GZU7 |