I. Expression across cell types
Name | Number of supported studies  | Average coverage | |
|---|---|---|---|
| epithelial cell | 3 studies | 35% ± 13% | |
| glutamatergic neuron | 3 studies | 25% ± 5% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| epithelial cell | 3 studies | 35% ± 13% | |
| glutamatergic neuron | 3 studies | 25% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| breast | 100% | 1818.05 | 459 / 459 | 100% | 57.69 | 1118 / 1118 |
| esophagus | 100% | 1510.94 | 1445 / 1445 | 100% | 28.31 | 183 / 183 |
| prostate | 100% | 1619.59 | 245 / 245 | 100% | 41.95 | 502 / 502 |
| uterus | 100% | 1923.37 | 170 / 170 | 100% | 32.37 | 459 / 459 |
| bladder | 100% | 1540.43 | 21 / 21 | 100% | 30.73 | 503 / 504 |
| ovary | 100% | 1691.97 | 180 / 180 | 100% | 24.68 | 429 / 430 |
| lung | 100% | 1144.19 | 576 / 578 | 100% | 28.06 | 1155 / 1155 |
| stomach | 100% | 1105.02 | 359 / 359 | 100% | 30.92 | 285 / 286 |
| liver | 100% | 811.31 | 226 / 226 | 100% | 18.69 | 404 / 406 |
| thymus | 100% | 1490.75 | 653 / 653 | 100% | 26.67 | 602 / 605 |
| brain | 99% | 1004.89 | 2627 / 2642 | 100% | 30.62 | 705 / 705 |
| intestine | 100% | 1572.92 | 966 / 966 | 99% | 30.37 | 523 / 527 |
| kidney | 100% | 1069.96 | 89 / 89 | 99% | 23.92 | 891 / 901 |
| skin | 100% | 1847.24 | 1809 / 1809 | 98% | 30.01 | 463 / 472 |
| adrenal gland | 100% | 1313.59 | 257 / 258 | 98% | 21.65 | 225 / 230 |
| pancreas | 98% | 753.69 | 323 / 328 | 99% | 24.93 | 176 / 178 |
| adipose | 100% | 1605.64 | 1204 / 1204 | 0% | 0 | 0 / 0 |
| blood vessel | 100% | 1446.98 | 1335 / 1335 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 100% | 30.82 | 29 / 29 |
| muscle | 100% | 2129.47 | 803 / 803 | 0% | 0 | 0 / 0 |
| spleen | 100% | 1753.39 | 241 / 241 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 100% | 29.06 | 45 / 45 |
| ureter | 0% | 0 | 0 / 0 | 100% | 9.50 | 1 / 1 |
| heart | 97% | 857.97 | 838 / 861 | 0% | 0 | 0 / 0 |
| peripheral blood | 95% | 1352.61 | 879 / 929 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 91% | 16.55 | 73 / 80 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0000398 | Biological process | mRNA splicing, via spliceosome |
| GO_0000245 | Biological process | spliceosomal complex assembly |
| GO_0016607 | Cellular component | nuclear speck |
| GO_0071014 | Cellular component | post-mRNA release spliceosomal complex |
| GO_0071013 | Cellular component | catalytic step 2 spliceosome |
| GO_0005654 | Cellular component | nucleoplasm |
| GO_0071007 | Cellular component | U2-type catalytic step 2 spliceosome |
| GO_0005681 | Cellular component | spliceosomal complex |
| GO_0000974 | Cellular component | Prp19 complex |
| GO_0005634 | Cellular component | nucleus |
| GO_0005515 | Molecular function | protein binding |
| GO_0003723 | Molecular function | RNA binding |
| Gene name | CRNKL1 |
| Protein name | Crooked neck-like protein 1 (Crooked neck homolog) (hCrn) Crooked neck pre-mRNA splicing factor 1 |
| Synonyms | CGI-201 MSTP021 CRN |
| Description | FUNCTION: Involved in pre-mRNA splicing process . As a component of the minor spliceosome, involved in the splicing of U12-type introns in pre-mRNAs (Probable). . |
| Accessions | ENST00000377340.6 [Q9BZJ0-1] ENST00000536226.2 [Q9BZJ0-2] Q9BZJ0 ENST00000377327.8 Q5JY65 ENST00000490910.5 ENST00000496549.5 [Q9BZJ0-5] A0A0C4DGD7 |
