CPNE6 | OmnibusX

sc-RNAseq data

Insufficient scRNA-seq data for expression of CPNE6 at tissue level.

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	99%	5878.18	2606 / 2642	80%	12.11	562 / 705
prostate	25%	251.46	62 / 245	41%	1.23	204 / 502
kidney	30%	546.69	27 / 89	1%	0.02	9 / 901
intestine	4%	22.89	35 / 966	9%	0.20	49 / 527
adrenal gland	1%	7.69	2 / 258	9%	0.47	21 / 230
stomach	0%	2.77	1 / 359	9%	0.19	25 / 286
bladder	0%	0	0 / 21	6%	0.16	32 / 504
uterus	0%	0	0 / 170	6%	0.19	27 / 459
eye	0%	0	0 / 0	5%	0.48	4 / 80
ovary	0%	0	0 / 180	5%	0.20	20 / 430
liver	1%	5.63	2 / 226	3%	0.53	12 / 406
thymus	0%	0	0 / 653	3%	0.18	20 / 605
lung	0%	0	0 / 578	3%	0.10	33 / 1155
skin	0%	0.84	2 / 1809	2%	0.11	9 / 472
esophagus	0%	2.14	5 / 1445	2%	0.02	3 / 183
blood vessel	1%	16.45	20 / 1335	0%	0	0 / 0
pancreas	0%	0	0 / 328	1%	0.02	2 / 178
adipose	1%	3.90	7 / 1204	0%	0	0 / 0
muscle	0%	0.69	1 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
breast	0%	0	0 / 459	0%	0	0 / 1118
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
heart	0%	0	0 / 861	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
peripheral blood	0%	0	0 / 929	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
spleen	0%	0	0 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	0%	0	0 / 45
ureter	0%	0	0 / 0	0%	0	0 / 1

GO_0098974	Biological process	postsynaptic actin cytoskeleton organization
GO_1903861	Biological process	positive regulation of dendrite extension
GO_0030154	Biological process	cell differentiation
GO_0071277	Biological process	cellular response to calcium ion
GO_0043204	Cellular component	perikaryon
GO_0030424	Cellular component	axon
GO_0070062	Cellular component	extracellular exosome
GO_0005768	Cellular component	endosome
GO_0005886	Cellular component	plasma membrane
GO_0016020	Cellular component	membrane
GO_0045334	Cellular component	clathrin-coated endocytic vesicle
GO_0030425	Cellular component	dendrite
GO_0005509	Molecular function	calcium ion binding
GO_0005544	Molecular function	calcium-dependent phospholipid binding
GO_0001786	Molecular function	phosphatidylserine binding
GO_0005515	Molecular function	protein binding

Gene name	CPNE6
Protein name	Copine-6 (Copine VI) (Neuronal-copine) (N-copine) Copine 6 Copine VI (Neuronal), isoform CRA_a (cDNA FLJ43205 fis, clone FEBRA2009185, highly similar to Copine-6)
Synonyms	hCG_40173
Description	FUNCTION: Calcium-dependent phospholipid-binding protein that plays a role in calcium-mediated intracellular processes. Binds phospholipid membranes in a calcium-dependent manner (By similarity). Plays a role in dendrite formation by melanocytes . .
Accessions	ENST00000557889.1 ENST00000689861.1 [O95741-1] H0YKJ0 H0YLS9 ENST00000645359.1 [O95741-2] ENST00000560828.5 ENST00000559197.5 ENST00000560761.5 ENST00000559207.1 H0YLV2 ENST00000558859.5 ENST00000647071.1 [O95741-1] H0YNV2 ENST00000560356.5 H0YNX4 B3KWK1 H0YNM7 ENST00000560884.5 H0YM67 H0YKP1 ENST00000537691.5 [O95741-2] ENST00000558795.1 ENST00000558450.5 ENST00000558541.5 O95741 ENST00000397016.6 [O95741-1] H0YK44 H0YLM2 H0YNP2 H0YNV6 ENST00000559778.5

CPNE6 report