Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 15 studies | 38% ± 15% | |
endothelial cell | 15 studies | 28% ± 10% | |
glutamatergic neuron | 12 studies | 41% ± 21% | |
GABAergic neuron | 10 studies | 38% ± 20% | |
astrocyte | 10 studies | 40% ± 17% | |
oligodendrocyte | 10 studies | 31% ± 12% | |
adipocyte | 9 studies | 32% ± 8% | |
fibroblast | 8 studies | 30% ± 9% | |
oligodendrocyte precursor cell | 7 studies | 42% ± 16% | |
epithelial cell | 6 studies | 32% ± 15% | |
type I pneumocyte | 5 studies | 36% ± 13% | |
neuron | 5 studies | 39% ± 13% | |
amacrine cell | 5 studies | 23% ± 7% | |
endothelial cell of lymphatic vessel | 5 studies | 28% ± 4% | |
macrophage | 5 studies | 26% ± 5% | |
smooth muscle cell | 5 studies | 25% ± 5% | |
interneuron | 5 studies | 58% ± 24% | |
cardiac muscle cell | 4 studies | 28% ± 3% | |
mesothelial cell | 4 studies | 36% ± 14% | |
club cell | 4 studies | 26% ± 10% | |
pericyte | 4 studies | 25% ± 6% | |
type II pneumocyte | 4 studies | 22% ± 6% | |
microglial cell | 4 studies | 22% ± 5% | |
retinal bipolar neuron | 3 studies | 19% ± 3% | |
GABAergic amacrine cell | 3 studies | 24% ± 9% | |
Mueller cell | 3 studies | 23% ± 5% | |
glycinergic amacrine cell | 3 studies | 25% ± 5% | |
retinal ganglion cell | 3 studies | 32% ± 8% | |
retinal rod cell | 3 studies | 21% ± 2% | |
basal cell | 3 studies | 37% ± 19% | |
respiratory goblet cell | 3 studies | 31% ± 12% | |
connective tissue cell | 3 studies | 23% ± 6% | |
ependymal cell | 3 studies | 50% ± 10% | |
goblet cell | 3 studies | 32% ± 12% | |
granule cell | 3 studies | 33% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 99% | 1960.66 | 2623 / 2642 | 99% | 6.01 | 701 / 705 |
thymus | 100% | 3286.15 | 653 / 653 | 98% | 6.26 | 591 / 605 |
breast | 100% | 1749.26 | 459 / 459 | 97% | 5.76 | 1086 / 1118 |
ovary | 100% | 2410.41 | 180 / 180 | 96% | 3.02 | 414 / 430 |
lung | 100% | 1669.48 | 577 / 578 | 96% | 4.74 | 1108 / 1155 |
prostate | 100% | 2005.43 | 245 / 245 | 96% | 4.72 | 480 / 502 |
kidney | 100% | 1327.94 | 89 / 89 | 91% | 3.74 | 822 / 901 |
pancreas | 99% | 872.73 | 325 / 328 | 92% | 2.94 | 163 / 178 |
adrenal gland | 100% | 1611.88 | 258 / 258 | 90% | 3.19 | 208 / 230 |
uterus | 100% | 2381.94 | 170 / 170 | 90% | 3.13 | 411 / 459 |
esophagus | 100% | 1551.50 | 1442 / 1445 | 87% | 3.99 | 160 / 183 |
skin | 100% | 1629.66 | 1803 / 1809 | 82% | 2.92 | 389 / 472 |
bladder | 100% | 1680.05 | 21 / 21 | 75% | 2.46 | 380 / 504 |
stomach | 99% | 1104.76 | 355 / 359 | 65% | 1.98 | 186 / 286 |
intestine | 99% | 1545.00 | 960 / 966 | 53% | 1.23 | 281 / 527 |
adipose | 100% | 1735.90 | 1204 / 1204 | 0% | 0 | 0 / 0 |
spleen | 100% | 924.72 | 241 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1747.23 | 1334 / 1335 | 0% | 0 | 0 / 0 |
muscle | 95% | 683.51 | 762 / 803 | 0% | 0 | 0 / 0 |
heart | 93% | 878.94 | 797 / 861 | 0% | 0 | 0 / 0 |
liver | 51% | 232.62 | 116 / 226 | 40% | 0.81 | 162 / 406 |
tonsil | 0% | 0 | 0 / 0 | 73% | 1.99 | 33 / 45 |
eye | 0% | 0 | 0 / 0 | 54% | 1.20 | 43 / 80 |
lymph node | 0% | 0 | 0 / 0 | 48% | 0.95 | 14 / 29 |
peripheral blood | 26% | 292.59 | 246 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0060271 | Biological process | cilium assembly |
GO_0035869 | Cellular component | ciliary transition zone |
GO_0016020 | Cellular component | membrane |
Gene name | CPLANE1 |
Protein name | Ciliogenesis and planar polarity effector 1 (Protein JBTS17) Ciliogenesis and planar polarity effector complex subunit 1 |
Synonyms | JBTS17 C5orf42 |
Description | FUNCTION: Involved in ciliogenesis . Involved in the establishment of cell polarity required for directional cell migration. Proposed to act in association with the CPLANE (ciliogenesis and planar polarity effectors) complex. Involved in recruitment of peripheral IFT-A proteins to basal bodies (By similarity). . |
Accessions | H0YA77 ENST00000509849.5 ENST00000508244.5 [Q9H799-1] A0A494BZW6 H0Y9I8 ENST00000651892.2 A0A7I2XYG4 Q9H799 ENST00000425232.7 ENST00000514429.5 |