COL23A1 report

Query

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
astrocyte	5 studies	32% ± 14%	Explore
cardiac muscle cell	4 studies	27% ± 5%	Explore
Mueller cell	4 studies	48% ± 23%	Explore
GABAergic neuron	3 studies	26% ± 5%	Explore
glutamatergic neuron	3 studies	38% ± 15%	Explore
endothelial cell of lymphatic vessel	3 studies	27% ± 7%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	3 studies	32% ± 11%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
thymus	100%	10426.55	653 / 653	87%	46.33	525 / 605
kidney	99%	483.99	88 / 89	85%	132.72	767 / 901
prostate	100%	1130.33	245 / 245	22%	1.90	108 / 502
brain	79%	373.70	2088 / 2642	32%	5.34	229 / 705
lung	94%	308.11	543 / 578	10%	1.36	111 / 1155
heart	98%	1090.15	841 / 861	0%	0	0 / 0
spleen	92%	243.26	221 / 241	0%	0	0 / 0
intestine	84%	344.21	812 / 966	1%	0.21	7 / 527
breast	79%	314.83	363 / 459	5%	0.60	55 / 1118
esophagus	77%	219.86	1118 / 1445	5%	1.70	10 / 183
stomach	76%	270.45	273 / 359	3%	0.26	10 / 286
ovary	6%	11.81	11 / 180	72%	16.98	309 / 430
uterus	56%	186.24	95 / 170	22%	7.95	101 / 459
skin	72%	626.50	1310 / 1809	4%	0.38	17 / 472
adipose	54%	111.05	646 / 1204	0%	0	0 / 0
adrenal gland	47%	102.54	120 / 258	3%	0.83	8 / 230
muscle	50%	130.73	400 / 803	0%	0	0 / 0
liver	29%	52.88	65 / 226	3%	0.38	14 / 406
blood vessel	30%	59.15	395 / 1335	0%	0	0 / 0
bladder	19%	40.05	4 / 21	4%	0.87	22 / 504
eye	0%	0	0 / 0	23%	2.70	18 / 80
tonsil	0%	0	0 / 0	22%	7.33	10 / 45
peripheral blood	9%	16.33	84 / 929	0%	0	0 / 0
pancreas	1%	2.84	2 / 328	6%	0.37	10 / 178
lymph node	0%	0	0 / 0	3%	0.18	1 / 29
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1