Name | Number of supported studies | Average coverage | |
---|---|---|---|
naive B cell | 13 studies | 23% ± 6% | |
B cell | 11 studies | 27% ± 10% | |
glutamatergic neuron | 8 studies | 42% ± 24% | |
GABAergic neuron | 7 studies | 41% ± 22% | |
endothelial cell | 5 studies | 34% ± 7% | |
oligodendrocyte precursor cell | 4 studies | 42% ± 23% | |
adipocyte | 4 studies | 28% ± 8% | |
cardiac muscle cell | 4 studies | 25% ± 9% | |
astrocyte | 4 studies | 50% ± 20% | |
interneuron | 4 studies | 43% ± 28% | |
microglial cell | 3 studies | 28% ± 5% | |
neuron | 3 studies | 41% ± 17% | |
granule cell | 3 studies | 37% ± 13% | |
oligodendrocyte | 3 studies | 44% ± 5% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 9 studies | 37% ± 18% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
bladder | 100% | 647.67 | 21 / 21 | 3% | 0.22 | 17 / 504 |
spleen | 97% | 155.51 | 233 / 241 | 0% | 0 | 0 / 0 |
heart | 83% | 123.30 | 711 / 861 | 0% | 0 | 0 / 0 |
kidney | 65% | 41.75 | 58 / 89 | 10% | 0.20 | 89 / 901 |
esophagus | 64% | 214.63 | 925 / 1445 | 3% | 0.12 | 6 / 183 |
brain | 61% | 113.93 | 1603 / 2642 | 5% | 0.11 | 34 / 705 |
intestine | 61% | 78.65 | 591 / 966 | 2% | 0.05 | 9 / 527 |
blood vessel | 62% | 110.06 | 827 / 1335 | 0% | 0 | 0 / 0 |
stomach | 53% | 335.04 | 192 / 359 | 7% | 0.14 | 21 / 286 |
pancreas | 57% | 32.68 | 186 / 328 | 4% | 0.13 | 7 / 178 |
muscle | 54% | 132.23 | 437 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 49% | 364.30 | 453 / 929 | 0% | 0 | 0 / 0 |
skin | 3% | 1.11 | 56 / 1809 | 34% | 2.45 | 162 / 472 |
prostate | 32% | 104.09 | 78 / 245 | 2% | 0.04 | 11 / 502 |
lymph node | 0% | 0 | 0 / 0 | 31% | 0.93 | 9 / 29 |
thymus | 9% | 10.31 | 56 / 653 | 19% | 0.46 | 115 / 605 |
tonsil | 0% | 0 | 0 / 0 | 27% | 1.90 | 12 / 45 |
lung | 17% | 7.44 | 100 / 578 | 8% | 0.32 | 91 / 1155 |
adrenal gland | 3% | 1.64 | 8 / 258 | 12% | 0.57 | 27 / 230 |
uterus | 2% | 0.96 | 3 / 170 | 6% | 0.41 | 29 / 459 |
breast | 5% | 1.62 | 21 / 459 | 2% | 0.09 | 27 / 1118 |
liver | 4% | 1.26 | 8 / 226 | 0% | 0.01 | 2 / 406 |
adipose | 4% | 2.76 | 46 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 1% | 0.02 | 1 / 80 |
ovary | 0% | 0 | 0 / 180 | 1% | 0.06 | 3 / 430 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0001501 | Biological process | skeletal system development |
GO_0030198 | Biological process | extracellular matrix organization |
GO_0007519 | Biological process | skeletal muscle tissue development |
GO_0007155 | Biological process | cell adhesion |
GO_0030154 | Biological process | cell differentiation |
GO_0098609 | Biological process | cell-cell adhesion |
GO_0005615 | Cellular component | extracellular space |
GO_0005788 | Cellular component | endoplasmic reticulum lumen |
GO_0005576 | Cellular component | extracellular region |
GO_0005581 | Cellular component | collagen trimer |
GO_0062023 | Cellular component | collagen-containing extracellular matrix |
GO_0031012 | Cellular component | extracellular matrix |
GO_0005201 | Molecular function | extracellular matrix structural constituent |
GO_0030020 | Molecular function | extracellular matrix structural constituent conferring tensile strength |
GO_0030674 | Molecular function | protein-macromolecule adaptor activity |
Gene name | COL19A1 |
Protein name | Collagen type XIX alpha 1 chain Collagen alpha-1(XIX) chain (Collagen alpha-1(Y) chain) |
Synonyms | |
Description | FUNCTION: May act as a cross-bridge between fibrils and other extracellular matrix molecules. Involved in skeletal myogenesis in the developing esophagus. May play a role in organization of the pericellular matrix or the sphinteric smooth muscle. . |
Accessions | ENST00000620364.5 ENST00000478620.2 Q5JVU1 Q14993 A0A087WVJ7 ENST00000455415.1 |