Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 37 studies | 36% ± 16% | |
smooth muscle cell | 22 studies | 30% ± 11% | |
pericyte | 17 studies | 30% ± 12% | |
connective tissue cell | 11 studies | 36% ± 8% | |
adventitial cell | 5 studies | 28% ± 4% | |
myofibroblast cell | 5 studies | 39% ± 14% | |
chondrocyte | 3 studies | 28% ± 8% | |
muscle cell | 3 studies | 37% ± 6% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
intestine | 3 studies | 32% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
thymus | 97% | 8409.55 | 634 / 653 | 89% | 79.30 | 538 / 605 |
breast | 93% | 12993.05 | 426 / 459 | 81% | 43.08 | 903 / 1118 |
prostate | 85% | 8089.60 | 209 / 245 | 80% | 20.01 | 404 / 502 |
bladder | 95% | 9403.76 | 20 / 21 | 50% | 12.43 | 250 / 504 |
uterus | 99% | 15349.94 | 168 / 170 | 40% | 26.33 | 183 / 459 |
intestine | 80% | 6917.28 | 776 / 966 | 57% | 14.43 | 299 / 527 |
ovary | 100% | 15211.09 | 180 / 180 | 36% | 8.81 | 156 / 430 |
lung | 75% | 4816.02 | 433 / 578 | 58% | 18.00 | 665 / 1155 |
esophagus | 71% | 4783.88 | 1033 / 1445 | 46% | 10.74 | 84 / 183 |
stomach | 48% | 4046.93 | 171 / 359 | 60% | 22.44 | 173 / 286 |
blood vessel | 100% | 73090.81 | 1335 / 1335 | 0% | 0 | 0 / 0 |
pancreas | 4% | 154.06 | 14 / 328 | 88% | 49.19 | 156 / 178 |
adipose | 89% | 8409.70 | 1072 / 1204 | 0% | 0 | 0 / 0 |
kidney | 37% | 2712.03 | 33 / 89 | 48% | 13.42 | 432 / 901 |
skin | 30% | 1466.62 | 545 / 1809 | 47% | 13.33 | 224 / 472 |
adrenal gland | 15% | 475.18 | 38 / 258 | 53% | 20.31 | 122 / 230 |
spleen | 66% | 2884.88 | 158 / 241 | 0% | 0 | 0 / 0 |
heart | 52% | 3789.90 | 445 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 44% | 5.78 | 20 / 45 |
liver | 8% | 264.12 | 19 / 226 | 34% | 7.55 | 138 / 406 |
brain | 0% | 25.15 | 12 / 2642 | 19% | 4.28 | 131 / 705 |
lymph node | 0% | 0 | 0 / 0 | 17% | 2.64 | 5 / 29 |
muscle | 7% | 302.27 | 56 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 3% | 0.26 | 2 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0030198 | Biological process | extracellular matrix organization |
GO_0048873 | Biological process | homeostasis of number of cells within a tissue |
GO_0003229 | Biological process | ventricular cardiac muscle tissue development |
GO_0030199 | Biological process | collagen fibril organization |
GO_0098609 | Biological process | cell-cell adhesion |
GO_0061050 | Biological process | regulation of cell growth involved in cardiac muscle cell development |
GO_0005615 | Cellular component | extracellular space |
GO_0005614 | Cellular component | interstitial matrix |
GO_0005576 | Cellular component | extracellular region |
GO_0005581 | Cellular component | collagen trimer |
GO_0005596 | Cellular component | collagen type XIV trimer |
GO_0062023 | Cellular component | collagen-containing extracellular matrix |
GO_0031012 | Cellular component | extracellular matrix |
GO_0005788 | Cellular component | endoplasmic reticulum lumen |
GO_0030020 | Molecular function | extracellular matrix structural constituent conferring tensile strength |
GO_0005201 | Molecular function | extracellular matrix structural constituent |
GO_0030674 | Molecular function | protein-macromolecule adaptor activity |
GO_0003723 | Molecular function | RNA binding |
GO_0005518 | Molecular function | collagen binding |
Gene name | COL14A1 |
Protein name | Collagen type XIV alpha 1 chain Alternative protein COL14A1 Collagen alpha-1(XIV) chain (Undulin) COL14A1 protein (Collagen type XIV alpha 1 chain) |
Synonyms | UND |
Description | FUNCTION: Plays an adhesive role by integrating collagen bundles. It is probably associated with the surface of interstitial collagen fibrils via COL1. The COL2 domain may then serve as a rigid arm which sticks out from the fibril and protrudes the large N-terminal globular domain into the extracellular space, where it might interact with other matrix molecules or cell surface receptors (By similarity). . |
Accessions | Q4G0W3 ENST00000309791.8 [Q05707-2] ENST00000498051.6 ENST00000523142.5 J3QT75 J3QT83 ENST00000440844.5 ENST00000537875.2 ENST00000297848.8 [Q05707-1] ENST00000434620.5 H0YBB2 Q05707 L8EB32 |