COL13A1 | OmnibusX

Name	Number of supported studies	Average coverage
fibroblast	6 studies	24% ± 8%	Explore
connective tissue cell	3 studies	33% ± 14%	Explore

sc-RNAseq data

Insufficient scRNA-seq data for expression of COL13A1 at tissue level.

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
prostate	100%	1320.41	244 / 245	63%	1.44	315 / 502
lung	99%	1259.22	573 / 578	58%	1.50	672 / 1155
esophagus	76%	237.40	1091 / 1445	63%	1.37	116 / 183
intestine	97%	495.75	933 / 966	40%	0.81	213 / 527
thymus	54%	148.81	354 / 653	82%	5.67	495 / 605
stomach	89%	600.84	319 / 359	43%	0.82	124 / 286
bladder	81%	400.76	17 / 21	51%	1.15	258 / 504
skin	85%	417.16	1529 / 1809	35%	1.35	163 / 472
uterus	68%	219.17	116 / 170	47%	2.37	217 / 459
pancreas	16%	31.76	53 / 328	86%	2.38	153 / 178
spleen	100%	835.61	240 / 241	0%	0	0 / 0
blood vessel	97%	1993.95	1296 / 1335	0%	0	0 / 0
ovary	26%	63.90	47 / 180	70%	4.28	299 / 430
kidney	57%	147.51	51 / 89	23%	0.54	210 / 901
adrenal gland	60%	151.35	154 / 258	21%	0.69	48 / 230
breast	22%	51.35	103 / 459	53%	1.23	590 / 1118
heart	49%	180.21	426 / 861	0%	0	0 / 0
tonsil	0%	0	0 / 0	49%	1.14	22 / 45
brain	24%	1272.33	634 / 2642	13%	0.52	95 / 705
adipose	36%	87.60	435 / 1204	0%	0	0 / 0
lymph node	0%	0	0 / 0	21%	0.27	6 / 29
muscle	13%	29.74	108 / 803	0%	0	0 / 0
liver	2%	3.35	4 / 226	9%	0.22	37 / 406
peripheral blood	3%	6.37	26 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	1%	0.01	1 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1

GO_0001501	Biological process	skeletal system development
GO_0030198	Biological process	extracellular matrix organization
GO_0001763	Biological process	morphogenesis of a branching structure
GO_0030154	Biological process	cell differentiation
GO_0001958	Biological process	endochondral ossification
GO_0098609	Biological process	cell-cell adhesion
GO_0007160	Biological process	cell-matrix adhesion
GO_0005911	Cellular component	cell-cell junction
GO_0005615	Cellular component	extracellular space
GO_0005788	Cellular component	endoplasmic reticulum lumen
GO_0005576	Cellular component	extracellular region
GO_0005600	Cellular component	collagen type XIII trimer
GO_0005886	Cellular component	plasma membrane
GO_0062023	Cellular component	collagen-containing extracellular matrix
GO_0045211	Cellular component	postsynaptic membrane
GO_0008201	Molecular function	heparin binding
GO_0030020	Molecular function	extracellular matrix structural constituent conferring tensile strength
GO_0005515	Molecular function	protein binding

Gene name	COL13A1
Protein name	Collagen alpha-1(XIII) chain (COLXIIIA1) Collagen type XIII alpha 1 chain
Synonyms
Description	FUNCTION: Involved in cell-matrix and cell-cell adhesion interactions that are required for normal development. May participate in the linkage between muscle fiber and basement membrane. May play a role in endochondral ossification of bone and branching morphogenesis of lung. Binds heparin. At neuromuscular junctions, may play a role in acetylcholine receptor clustering . .
Accessions	ENST00000354547.7 [Q5TAT6-2] ENST00000673957.2 ENST00000674008.2 H7BYT9 A0A669KB25 ENST00000673914.2 ENST00000398975.6 A0A669KB79 ENST00000357811.8 ENST00000456019.1 A0A669KB16 Q5TAT6 ENST00000673977.1 ENST00000520267.5 [Q5TAT6-10] A0A6E1W314 H7BZB6 A0A669KBE0 ENST00000682679.1 A0A669KB54 ENST00000673842.1 ENST00000517713.5 [Q5TAT6-4] A0A669KB39 ENST00000674124.2 ENST00000673641.2 A0A669KBB8 ENST00000673802.2 E7EX21 ENST00000398978.8 [Q5TAT6-1] ENST00000645393.2 ENST00000520133.5 [Q5TAT6-11] ENST00000674121.1 ENST00000398969.8 ENST00000673628.2 A0A2R8YGI3 A0A669KB28 ENST00000674040.2 ENST00000479733.5 E7ES50 ENST00000673931.1 A0A669KBF9 ENST00000522165.5 [Q5TAT6-8] A0A669KA03 A0A669KB55 ENST00000673768.1 A0A669KAZ4

COL13A1 report