Name | Number of supported studies | Average coverage | |
---|---|---|---|
pericyte | 24 studies | 33% ± 15% | |
smooth muscle cell | 17 studies | 31% ± 14% | |
ciliated cell | 16 studies | 43% ± 13% | |
oligodendrocyte | 15 studies | 63% ± 21% | |
adipocyte | 9 studies | 35% ± 7% | |
goblet cell | 7 studies | 33% ± 23% | |
endothelial cell | 7 studies | 31% ± 8% | |
epithelial cell | 7 studies | 33% ± 14% | |
retinal bipolar neuron | 5 studies | 31% ± 12% | |
kidney loop of Henle epithelial cell | 5 studies | 34% ± 14% | |
astrocyte | 5 studies | 28% ± 12% | |
fibroblast | 5 studies | 37% ± 13% | |
basal cell | 5 studies | 24% ± 8% | |
hepatocyte | 4 studies | 63% ± 29% | |
classical monocyte | 4 studies | 19% ± 4% | |
GABAergic neuron | 4 studies | 23% ± 6% | |
brush cell | 4 studies | 33% ± 8% | |
monocyte | 4 studies | 19% ± 2% | |
mesothelial cell | 4 studies | 44% ± 27% | |
renal principal cell | 4 studies | 30% ± 9% | |
cholangiocyte | 3 studies | 45% ± 15% | |
plasma cell | 3 studies | 24% ± 5% | |
ON-bipolar cell | 3 studies | 36% ± 8% | |
retinal rod cell | 3 studies | 20% ± 2% | |
rod bipolar cell | 3 studies | 53% ± 12% | |
muscle cell | 3 studies | 44% ± 31% | |
glutamatergic neuron | 3 studies | 23% ± 4% | |
kidney distal convoluted tubule epithelial cell | 3 studies | 41% ± 9% | |
renal alpha-intercalated cell | 3 studies | 25% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 7181.31 | 459 / 459 | 99% | 18.85 | 1106 / 1118 |
stomach | 100% | 3320.81 | 358 / 359 | 99% | 11.80 | 283 / 286 |
prostate | 100% | 4625.32 | 244 / 245 | 99% | 10.45 | 496 / 502 |
intestine | 99% | 4331.43 | 955 / 966 | 98% | 11.02 | 517 / 527 |
liver | 99% | 3677.27 | 224 / 226 | 97% | 9.45 | 393 / 406 |
pancreas | 100% | 6441.22 | 328 / 328 | 96% | 13.46 | 170 / 178 |
kidney | 100% | 7043.99 | 89 / 89 | 95% | 11.13 | 857 / 901 |
lung | 99% | 3077.40 | 573 / 578 | 85% | 6.10 | 985 / 1155 |
uterus | 100% | 4066.84 | 170 / 170 | 80% | 5.81 | 369 / 459 |
ovary | 82% | 1623.03 | 147 / 180 | 98% | 7.99 | 423 / 430 |
esophagus | 96% | 2008.22 | 1386 / 1445 | 81% | 10.11 | 148 / 183 |
bladder | 95% | 2340.95 | 20 / 21 | 80% | 6.06 | 404 / 504 |
brain | 90% | 2485.85 | 2367 / 2642 | 74% | 3.62 | 525 / 705 |
skin | 76% | 1389.52 | 1374 / 1809 | 87% | 8.14 | 409 / 472 |
thymus | 100% | 4016.47 | 652 / 653 | 45% | 2.18 | 274 / 605 |
adipose | 100% | 5580.44 | 1204 / 1204 | 0% | 0 | 0 / 0 |
spleen | 98% | 1920.85 | 235 / 241 | 0% | 0 | 0 / 0 |
heart | 94% | 1580.73 | 808 / 861 | 0% | 0 | 0 / 0 |
adrenal gland | 31% | 328.42 | 81 / 258 | 62% | 3.17 | 143 / 230 |
blood vessel | 85% | 2093.44 | 1132 / 1335 | 0% | 0 | 0 / 0 |
muscle | 85% | 1225.82 | 680 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 65% | 1838.90 | 604 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 61% | 2.29 | 49 / 80 |
tonsil | 0% | 0 | 0 / 0 | 58% | 2.44 | 26 / 45 |
lymph node | 0% | 0 | 0 / 0 | 45% | 1.69 | 13 / 29 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0008285 | Biological process | negative regulation of cell population proliferation |
GO_0007097 | Biological process | nuclear migration |
GO_0031175 | Biological process | neuron projection development |
GO_0034993 | Cellular component | meiotic nuclear membrane microtubule tethering complex |
GO_0005640 | Cellular component | nuclear outer membrane |
GO_0005737 | Cellular component | cytoplasm |
GO_0051015 | Molecular function | actin filament binding |
Gene name | CLMN |
Protein name | Calmin (Calponin-like transmembrane domain protein) Calmin Calmin (Calponin-like, transmembrane) CLMN protein |
Synonyms | KIAA1188 |
Description | |
Accessions | G3V3D8 ENST00000298912.9 G3V5E0 ENST00000555615.1 A0PJD0 G3V5U3 Q6NUQ2 Q96JQ2 G3V4C0 A1A4B9 ENST00000556441.1 ENST00000553733.1 ENST00000555336.6 |