Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell of lymphatic vessel | 12 studies | 27% ± 11% | |
fibroblast | 10 studies | 33% ± 14% | |
adventitial cell | 4 studies | 32% ± 16% | |
Mueller cell | 4 studies | 30% ± 15% | |
astrocyte | 4 studies | 36% ± 11% |
Insufficient scRNA-seq data for expression of CHRDL1 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 89% | 9759.93 | 219 / 245 | 97% | 57.47 | 485 / 502 |
breast | 99% | 11836.54 | 456 / 459 | 60% | 15.38 | 674 / 1118 |
lung | 99% | 12268.90 | 575 / 578 | 58% | 12.80 | 674 / 1155 |
thymus | 96% | 6668.36 | 630 / 653 | 42% | 8.45 | 252 / 605 |
brain | 46% | 1650.29 | 1225 / 2642 | 87% | 31.46 | 613 / 705 |
intestine | 86% | 8173.78 | 828 / 966 | 35% | 7.56 | 182 / 527 |
uterus | 96% | 14203.62 | 163 / 170 | 24% | 20.70 | 109 / 459 |
esophagus | 82% | 9071.91 | 1192 / 1445 | 33% | 8.77 | 61 / 183 |
bladder | 81% | 3018.57 | 17 / 21 | 27% | 5.54 | 136 / 504 |
adipose | 100% | 17671.13 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 83% | 6507.38 | 1107 / 1335 | 0% | 0 | 0 / 0 |
skin | 42% | 1661.16 | 762 / 1809 | 38% | 20.59 | 179 / 472 |
stomach | 38% | 2194.32 | 135 / 359 | 38% | 7.69 | 110 / 286 |
kidney | 45% | 1439.58 | 40 / 89 | 24% | 7.41 | 216 / 901 |
pancreas | 3% | 57.38 | 9 / 328 | 62% | 19.73 | 110 / 178 |
spleen | 63% | 2480.51 | 153 / 241 | 0% | 0 | 0 / 0 |
ovary | 12% | 871.13 | 21 / 180 | 50% | 8.79 | 217 / 430 |
lymph node | 0% | 0 | 0 / 0 | 38% | 2.74 | 11 / 29 |
heart | 33% | 1218.93 | 287 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 31% | 3.68 | 14 / 45 |
adrenal gland | 5% | 113.66 | 12 / 258 | 7% | 0.64 | 15 / 230 |
eye | 0% | 0 | 0 / 0 | 10% | 1.36 | 8 / 80 |
liver | 0% | 0 | 0 / 226 | 8% | 1.09 | 33 / 406 |
muscle | 6% | 164.92 | 48 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0030509 | Biological process | BMP signaling pathway |
GO_0048167 | Biological process | regulation of synaptic plasticity |
GO_0001503 | Biological process | ossification |
GO_0098976 | Biological process | excitatory chemical synaptic transmission |
GO_0030154 | Biological process | cell differentiation |
GO_0030514 | Biological process | negative regulation of BMP signaling pathway |
GO_0060074 | Biological process | synapse maturation |
GO_0001654 | Biological process | eye development |
GO_0000578 | Biological process | embryonic axis specification |
GO_0097113 | Biological process | AMPA glutamate receptor clustering |
GO_0005788 | Cellular component | endoplasmic reticulum lumen |
GO_0005576 | Cellular component | extracellular region |
GO_0045202 | Cellular component | synapse |
GO_0005886 | Cellular component | plasma membrane |
GO_0050431 | Molecular function | transforming growth factor beta binding |
GO_0036122 | Molecular function | BMP binding |
Gene name | CHRDL1 |
Protein name | Chordin-like protein 1 (Neuralin-1) (Neurogenesin-1) (Ventroptin) Chordin like 1 |
Synonyms | NRLN1 |
Description | FUNCTION: Antagonizes the function of BMP4 by binding to it and preventing its interaction with receptors. Alters the fate commitment of neural stem cells from gliogenesis to neurogenesis. Contributes to neuronal differentiation of neural stem cells in the brain by preventing the adoption of a glial fate. May play a crucial role in dorsoventral axis formation. May play a role in embryonic bone formation (By similarity). May also play an important role in regulating retinal angiogenesis through modulation of BMP4 actions in endothelial cells. Plays a role during anterior segment eye development. . |
Accessions | Q9BU40 A0A452Q6Z9 ENST00000482160.5 [Q9BU40-3] ENST00000444321.2 [Q9BU40-5] ENST00000394797.8 [Q9BU40-6] ENST00000372045.5 ENST00000372042.6 [Q9BU40-4] |