CDH6 | OmnibusX

Name	Number of supported studies	Average coverage
pericyte	26 studies	32% ± 13%	Explore
smooth muscle cell	15 studies	29% ± 9%	Explore
epithelial cell of proximal tubule	5 studies	28% ± 11%	Explore
endothelial cell	5 studies	31% ± 12%	Explore
glutamatergic neuron	5 studies	28% ± 9%	Explore
oligodendrocyte precursor cell	4 studies	26% ± 11%	Explore
neuron	3 studies	39% ± 16%	Explore
GABAergic neuron	3 studies	20% ± 4%	Explore

sc-RNAseq data

Insufficient scRNA-seq data for expression of CDH6 at tissue level.

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
kidney	100%	4939.09	89 / 89	89%	87.81	798 / 901
thymus	98%	667.12	641 / 653	67%	11.61	404 / 605
brain	88%	747.32	2334 / 2642	54%	5.43	379 / 705
ovary	38%	172.56	69 / 180	88%	42.79	378 / 430
uterus	96%	618.21	163 / 170	17%	3.68	76 / 459
lung	100%	1267.85	577 / 578	10%	1.83	120 / 1155
esophagus	87%	486.09	1264 / 1445	19%	1.68	35 / 183
breast	97%	732.50	447 / 459	6%	0.30	63 / 1118
bladder	95%	586.10	20 / 21	4%	0.32	20 / 504
adipose	99%	1074.11	1191 / 1204	0%	0	0 / 0
blood vessel	93%	1912.42	1245 / 1335	0%	0	0 / 0
prostate	85%	432.73	208 / 245	0%	0.02	2 / 502
intestine	76%	366.33	733 / 966	8%	0.49	40 / 527
stomach	64%	224.23	229 / 359	12%	1.29	34 / 286
heart	66%	223.34	571 / 861	0%	0	0 / 0
pancreas	15%	56.95	48 / 328	43%	3.89	76 / 178
muscle	48%	136.83	389 / 803	0%	0	0 / 0
skin	38%	138.36	694 / 1809	5%	1.16	24 / 472
adrenal gland	7%	20.02	19 / 258	18%	1.64	42 / 230
liver	7%	23.05	16 / 226	17%	5.55	71 / 406
spleen	23%	61.22	56 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	2%	0.10	1 / 45
peripheral blood	1%	2.50	5 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1

GO_0007043	Biological process	cell-cell junction assembly
GO_0034332	Biological process	adherens junction organization
GO_0007219	Biological process	Notch signaling pathway
GO_0007275	Biological process	multicellular organism development
GO_0099560	Biological process	synaptic membrane adhesion
GO_0007155	Biological process	cell adhesion
GO_0044331	Biological process	cell-cell adhesion mediated by cadherin
GO_0007156	Biological process	homophilic cell adhesion via plasma membrane adhesion molecules
GO_0016339	Biological process	calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO_0000902	Biological process	cell morphogenesis
GO_0016477	Biological process	cell migration
GO_0098978	Cellular component	glutamatergic synapse
GO_0005886	Cellular component	plasma membrane
GO_0005654	Cellular component	nucleoplasm
GO_0016342	Cellular component	catenin complex
GO_0005912	Cellular component	adherens junction
GO_0030054	Cellular component	cell junction
GO_0045296	Molecular function	cadherin binding
GO_0008013	Molecular function	beta-catenin binding
GO_0005509	Molecular function	calcium ion binding

Gene name	CDH6
Protein name	Cadherin 6 Alternative protein CDH6 Cadherin-6 (Kidney cadherin) (K-cadherin)
Synonyms
Description	FUNCTION: Cadherins are calcium-dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types.
Accessions	ENST00000265071.3 [P55285-1] ENST00000514738.5 P55285 L8EAC6 D6RF86

CDH6 report