Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 13 studies | 28% ± 13% | |
fibroblast | 12 studies | 24% ± 7% | |
pericyte | 10 studies | 26% ± 9% | |
oligodendrocyte | 9 studies | 22% ± 6% | |
capillary endothelial cell | 8 studies | 27% ± 20% | |
myofibroblast cell | 8 studies | 23% ± 8% | |
epithelial cell | 8 studies | 24% ± 8% | |
connective tissue cell | 6 studies | 33% ± 18% | |
endothelial cell of artery | 5 studies | 30% ± 17% | |
basal cell | 5 studies | 32% ± 16% | |
secretory cell | 5 studies | 29% ± 7% | |
smooth muscle cell | 4 studies | 27% ± 3% | |
abnormal cell | 4 studies | 26% ± 12% | |
endothelial cell of vascular tree | 4 studies | 23% ± 4% | |
goblet cell | 4 studies | 24% ± 6% | |
squamous epithelial cell | 3 studies | 32% ± 8% | |
vein endothelial cell | 3 studies | 29% ± 6% | |
mesothelial cell | 3 studies | 37% ± 15% | |
pancreatic ductal cell | 3 studies | 57% ± 6% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 4 studies | 23% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 5068.17 | 1439 / 1445 | 100% | 277.84 | 183 / 183 |
intestine | 100% | 4084.24 | 966 / 966 | 99% | 226.18 | 522 / 527 |
ovary | 100% | 5926.60 | 180 / 180 | 98% | 173.08 | 421 / 430 |
stomach | 100% | 11418.64 | 359 / 359 | 98% | 283.07 | 279 / 286 |
liver | 100% | 7076.15 | 226 / 226 | 97% | 195.94 | 395 / 406 |
pancreas | 100% | 9066.26 | 328 / 328 | 97% | 227.37 | 172 / 178 |
lung | 100% | 6752.29 | 577 / 578 | 96% | 176.04 | 1109 / 1155 |
breast | 100% | 6233.61 | 459 / 459 | 95% | 110.36 | 1063 / 1118 |
uterus | 100% | 7488.92 | 170 / 170 | 95% | 155.42 | 436 / 459 |
prostate | 100% | 4437.49 | 244 / 245 | 95% | 76.30 | 478 / 502 |
kidney | 100% | 4691.94 | 89 / 89 | 94% | 94.14 | 845 / 901 |
bladder | 100% | 3925.67 | 21 / 21 | 87% | 122.54 | 439 / 504 |
thymus | 100% | 3708.22 | 651 / 653 | 87% | 102.48 | 527 / 605 |
skin | 100% | 6570.12 | 1809 / 1809 | 80% | 102.58 | 376 / 472 |
brain | 78% | 2727.61 | 2058 / 2642 | 98% | 132.67 | 691 / 705 |
adrenal gland | 100% | 8601.70 | 258 / 258 | 71% | 69.16 | 163 / 230 |
adipose | 100% | 6551.21 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 7378.44 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 136.09 | 79 / 80 |
heart | 98% | 2954.09 | 842 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 169.48 | 44 / 45 |
spleen | 96% | 2649.66 | 231 / 241 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 55% | 22.17 | 16 / 29 |
muscle | 22% | 315.76 | 179 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 2% | 39.30 | 22 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007266 | Biological process | Rho protein signal transduction |
GO_0008360 | Biological process | regulation of cell shape |
GO_0030838 | Biological process | positive regulation of actin filament polymerization |
GO_0031274 | Biological process | positive regulation of pseudopodium assembly |
GO_0098609 | Biological process | cell-cell adhesion |
GO_0005856 | Cellular component | cytoskeleton |
GO_0005829 | Cellular component | cytosol |
GO_0005912 | Cellular component | adherens junction |
GO_0005886 | Cellular component | plasma membrane |
GO_0012505 | Cellular component | endomembrane system |
GO_0005737 | Cellular component | cytoplasm |
GO_0005925 | Cellular component | focal adhesion |
GO_0098641 | Molecular function | cadherin binding involved in cell-cell adhesion |
GO_0005515 | Molecular function | protein binding |
GO_0031267 | Molecular function | small GTPase binding |
Gene name | CDC42EP1 |
Protein name | CDC42 effector protein 1 Cdc42 effector protein 1 (Binder of Rho GTPases 5) (Serum protein MSE55) |
Synonyms | BORG5 CEP1 MSE55 |
Description | FUNCTION: Probably involved in the organization of the actin cytoskeleton. Induced membrane extensions in fibroblasts. . |
Accessions | ENST00000415670.1 Q00587 ENST00000430687.1 B0QYC6 B0QYC7 B0QYC8 ENST00000249014.5 [Q00587-1] ENST00000434728.1 |