CCL16 | OmnibusX

sc-RNAseq data

Insufficient scRNA-seq data for expression of CCL16 at tissue level.

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
liver	100%	3400.08	226 / 226	89%	124.00	361 / 406
breast	100%	82.42	457 / 459	3%	0.05	28 / 1118
spleen	100%	310.46	241 / 241	0%	0	0 / 0
uterus	99%	119.34	168 / 170	1%	0.01	3 / 459
prostate	93%	71.67	228 / 245	4%	0.06	20 / 502
thymus	94%	61.30	615 / 653	1%	0.01	4 / 605
adipose	94%	82.63	1136 / 1204	0%	0	0 / 0
bladder	90%	45.43	19 / 21	2%	0.02	8 / 504
kidney	81%	39.54	72 / 89	8%	0.20	68 / 901
esophagus	82%	38.97	1179 / 1445	2%	0.02	3 / 183
adrenal gland	79%	34.53	205 / 258	3%	0.05	6 / 230
lung	77%	47.46	447 / 578	2%	0.20	26 / 1155
intestine	76%	26.55	737 / 966	1%	0.14	6 / 527
blood vessel	64%	27.18	857 / 1335	0%	0	0 / 0
ovary	49%	20.37	88 / 180	0%	0	0 / 430
skin	45%	13.53	818 / 1809	1%	0.03	6 / 472
stomach	42%	13.93	151 / 359	3%	0.10	9 / 286
heart	36%	11.44	312 / 861	0%	0	0 / 0
muscle	33%	7.87	268 / 803	0%	0	0 / 0
pancreas	16%	3.27	52 / 328	3%	0.04	6 / 178
peripheral blood	10%	5.78	89 / 929	0%	0	0 / 0
brain	0%	0.01	1 / 2642	0%	0.00	1 / 705
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
tonsil	0%	0	0 / 0	0%	0	0 / 45
ureter	0%	0	0 / 0	0%	0	0 / 1

GO_0007154	Biological process	cell communication
GO_0061844	Biological process	antimicrobial humoral immune response mediated by antimicrobial peptide
GO_0070098	Biological process	chemokine-mediated signaling pathway
GO_0030335	Biological process	positive regulation of cell migration
GO_0006954	Biological process	inflammatory response
GO_0006935	Biological process	chemotaxis
GO_0043547	Biological process	positive regulation of GTPase activity
GO_0007267	Biological process	cell-cell signaling
GO_0048245	Biological process	eosinophil chemotaxis
GO_0050918	Biological process	positive chemotaxis
GO_0005615	Cellular component	extracellular space
GO_0005576	Cellular component	extracellular region
GO_0048020	Molecular function	CCR chemokine receptor binding
GO_0042056	Molecular function	chemoattractant activity
GO_0005515	Molecular function	protein binding
GO_0008009	Molecular function	chemokine activity

Gene name	CCL16
Protein name	C-C motif chemokine 16 (Chemokine CC-4) (HCC-4) (Chemokine LEC) (IL-10-inducible chemokine) (LCC-1) (Liver-expressed chemokine) (Lymphocyte and monocyte chemoattractant) (LMC) (Monotactin-1) (MTN-1) (NCC-4) (Small-inducible cytokine A16) C-C motif chemokine C-C motif chemokine 16 (C-C motif chemokine ligand 16)
Synonyms	ILINCK NCC4 SCYA16
Description	FUNCTION: Shows chemotactic activity for lymphocytes and monocytes but not neutrophils. Also shows potent myelosuppressive activity, suppresses proliferation of myeloid progenitor cells. Recombinant SCYA16 shows chemotactic activity for monocytes and THP-1 monocytes, but not for resting lymphocytes and neutrophils. Induces a calcium flux in THP-1 cells that were desensitized by prior expression to RANTES.
Accessions	ENST00000633277.1 ENST00000610493.1 A0A087WUU4 ENST00000611905.2 O15467 ENST00000631489.1 A0A087WUE5 ENST00000621559.2 ENST00000613642.4

CCL16 report