Name | Number of supported studies | Average coverage | |
---|---|---|---|
macrophage | 11 studies | 27% ± 9% | |
endothelial cell | 10 studies | 28% ± 12% | |
astrocyte | 10 studies | 27% ± 13% | |
oligodendrocyte precursor cell | 8 studies | 27% ± 13% | |
GABAergic neuron | 7 studies | 35% ± 20% | |
interneuron | 6 studies | 33% ± 20% | |
microglial cell | 6 studies | 25% ± 8% | |
epithelial cell | 5 studies | 25% ± 6% | |
glutamatergic neuron | 5 studies | 47% ± 24% | |
cardiac muscle cell | 4 studies | 30% ± 3% | |
endothelial cell of lymphatic vessel | 4 studies | 24% ± 6% | |
monocyte | 4 studies | 20% ± 2% | |
oligodendrocyte | 4 studies | 23% ± 3% | |
classical monocyte | 3 studies | 17% ± 2% | |
neuron | 3 studies | 28% ± 8% | |
myeloid cell | 3 studies | 25% ± 8% | |
retinal cone cell | 3 studies | 20% ± 3% | |
ciliated cell | 3 studies | 18% ± 2% | |
natural killer cell | 3 studies | 16% ± 1% | |
transit amplifying cell | 3 studies | 23% ± 10% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2679.71 | 1445 / 1445 | 100% | 18.78 | 183 / 183 |
intestine | 100% | 3784.29 | 966 / 966 | 100% | 16.92 | 527 / 527 |
lung | 100% | 4190.86 | 578 / 578 | 100% | 14.85 | 1152 / 1155 |
stomach | 100% | 2488.18 | 359 / 359 | 100% | 16.35 | 285 / 286 |
bladder | 100% | 3019.81 | 21 / 21 | 100% | 12.75 | 502 / 504 |
uterus | 100% | 3260.32 | 170 / 170 | 100% | 15.26 | 457 / 459 |
breast | 100% | 3514.99 | 459 / 459 | 99% | 16.29 | 1111 / 1118 |
brain | 99% | 2807.20 | 2625 / 2642 | 100% | 23.71 | 705 / 705 |
thymus | 100% | 4479.88 | 653 / 653 | 99% | 16.99 | 601 / 605 |
kidney | 100% | 3069.89 | 89 / 89 | 99% | 15.37 | 892 / 901 |
pancreas | 100% | 2540.80 | 328 / 328 | 99% | 15.57 | 176 / 178 |
adrenal gland | 100% | 4862.00 | 258 / 258 | 98% | 12.98 | 225 / 230 |
skin | 100% | 3426.45 | 1809 / 1809 | 97% | 16.31 | 460 / 472 |
prostate | 100% | 2833.67 | 245 / 245 | 97% | 9.39 | 488 / 502 |
ovary | 100% | 4384.75 | 180 / 180 | 94% | 8.73 | 405 / 430 |
liver | 100% | 1452.17 | 226 / 226 | 86% | 7.76 | 350 / 406 |
adipose | 100% | 3275.71 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 13.04 | 29 / 29 |
muscle | 100% | 2579.96 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 4263.85 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 16.29 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.11 | 1 / 1 |
blood vessel | 100% | 2664.43 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 4081.98 | 850 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 96% | 2500.18 | 896 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 90% | 9.05 | 72 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0015031 | Biological process | protein transport |
GO_0032456 | Biological process | endocytic recycling |
GO_0006893 | Biological process | Golgi to plasma membrane transport |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0005769 | Cellular component | early endosome |
GO_0005515 | Molecular function | protein binding |
Gene name | CCDC93 |
Protein name | Coiled-coil domain-containing protein 93 |
Synonyms | |
Description | FUNCTION: Component of the CCC complex, which is involved in the regulation of endosomal recycling of surface proteins, including integrins, signaling receptor and channels. The CCC complex associates with SNX17, retriever and WASH complexes to prevent lysosomal degradation and promote cell surface recycling of numerous cargos such as integrins ITGA5:ITGB1 . Involved in copper-dependent ATP7A trafficking between the trans-Golgi network and vesicles in the cell periphery; the function is proposed to depend on its association within the CCC complex and cooperation with the WASH complex on early endosomes and is dependent on its interaction with WASHC2C . .; FUNCTION: (Microbial infection) The CCC complex, in collaboration with the heterotrimeric retriever complex, mediates the exit of human papillomavirus to the cell surface. . |
Accessions | ENST00000437999.5 Q567U6 ENST00000319432.9 H7C050 F8W9X7 ENST00000376300.7 |