Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 18 studies | 73% ± 25% | |
oligodendrocyte | 16 studies | 84% ± 15% | |
oligodendrocyte precursor cell | 16 studies | 86% ± 17% | |
glutamatergic neuron | 13 studies | 90% ± 15% | |
GABAergic neuron | 11 studies | 81% ± 18% | |
endothelial cell | 10 studies | 50% ± 24% | |
microglial cell | 10 studies | 56% ± 20% | |
retinal cone cell | 9 studies | 84% ± 19% | |
retinal rod cell | 9 studies | 77% ± 23% | |
amacrine cell | 8 studies | 70% ± 23% | |
neuron | 7 studies | 58% ± 24% | |
interneuron | 7 studies | 67% ± 29% | |
retinal ganglion cell | 7 studies | 84% ± 20% | |
retina horizontal cell | 6 studies | 55% ± 24% | |
Mueller cell | 6 studies | 46% ± 29% | |
retinal bipolar neuron | 5 studies | 71% ± 20% | |
OFF-bipolar cell | 5 studies | 72% ± 34% | |
ON-bipolar cell | 5 studies | 73% ± 33% | |
glial cell | 4 studies | 45% ± 25% | |
granule cell | 4 studies | 81% ± 22% | |
Schwann cell | 4 studies | 70% ± 17% | |
macrophage | 3 studies | 45% ± 16% | |
differentiation-committed oligodendrocyte precursor | 3 studies | 89% ± 2% | |
GABAergic interneuron | 3 studies | 82% ± 20% | |
cardiac muscle cell | 3 studies | 22% ± 1% | |
GABAergic amacrine cell | 3 studies | 97% ± 3% | |
glycinergic amacrine cell | 3 studies | 92% ± 4% | |
rod bipolar cell | 3 studies | 83% ± 22% | |
neural progenitor cell | 3 studies | 63% ± 32% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 7167.42 | 2638 / 2642 | 98% | 68.33 | 694 / 705 |
adrenal gland | 5% | 54.17 | 12 / 258 | 65% | 17.85 | 149 / 230 |
prostate | 23% | 225.05 | 57 / 245 | 45% | 2.48 | 228 / 502 |
intestine | 48% | 723.21 | 460 / 966 | 1% | 0.02 | 4 / 527 |
breast | 31% | 347.61 | 142 / 459 | 14% | 0.77 | 156 / 1118 |
esophagus | 40% | 459.88 | 572 / 1445 | 3% | 0.31 | 6 / 183 |
adipose | 28% | 289.13 | 340 / 1204 | 0% | 0 | 0 / 0 |
heart | 26% | 232.42 | 224 / 861 | 0% | 0 | 0 / 0 |
stomach | 17% | 207.24 | 62 / 359 | 1% | 0.05 | 4 / 286 |
bladder | 14% | 102.57 | 3 / 21 | 2% | 0.12 | 9 / 504 |
muscle | 9% | 70.50 | 72 / 803 | 0% | 0 | 0 / 0 |
ovary | 1% | 6.66 | 2 / 180 | 5% | 0.25 | 20 / 430 |
lung | 2% | 12.00 | 10 / 578 | 3% | 0.13 | 38 / 1155 |
thymus | 2% | 14.90 | 12 / 653 | 2% | 0.09 | 12 / 605 |
blood vessel | 4% | 38.47 | 48 / 1335 | 0% | 0 | 0 / 0 |
uterus | 1% | 6.22 | 1 / 170 | 3% | 0.11 | 13 / 459 |
eye | 0% | 0 | 0 / 0 | 3% | 0.26 | 2 / 80 |
pancreas | 0% | 0 | 0 / 328 | 2% | 0.08 | 4 / 178 |
skin | 0% | 1.06 | 3 / 1809 | 1% | 0.05 | 7 / 472 |
liver | 0% | 0 | 0 / 226 | 1% | 0.08 | 6 / 406 |
kidney | 0% | 0 | 0 / 89 | 0% | 0.01 | 2 / 901 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 45 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007156 | Biological process | homophilic cell adhesion via plasma membrane adhesion molecules |
GO_0030424 | Cellular component | axon |
GO_0045202 | Cellular component | synapse |
GO_0005886 | Cellular component | plasma membrane |
GO_0032809 | Cellular component | neuronal cell body membrane |
Gene name | CADM2 |
Protein name | Cell adhesion molecule 2 (Immunoglobulin superfamily member 4D) (IgSF4D) (Nectin-like protein 3) (NECL-3) (Synaptic cell adhesion molecule 2) (SynCAM 2) Cell adhesion molecule 2 isoform 4 |
Synonyms | IGSF4D NECL3 |
Description | FUNCTION: Adhesion molecule that engages in homo- and heterophilic interactions with the other nectin-like family members, leading to cell aggregation. Important for synapse organization, providing regulated trans-synaptic adhesion. Preferentially binds to oligodendrocytes. . |
Accessions | ENST00000383699.8 [Q8N3J6-2] Q8N3J6 ENST00000407528.6 [Q8N3J6-1] ENST00000405615.2 [Q8N3J6-3] G3XHN4 |