Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 23 studies | 38% ± 17% | |
astrocyte | 22 studies | 53% ± 20% | |
oligodendrocyte | 14 studies | 36% ± 14% | |
oligodendrocyte precursor cell | 14 studies | 43% ± 19% | |
glutamatergic neuron | 13 studies | 60% ± 20% | |
GABAergic neuron | 11 studies | 62% ± 23% | |
microglial cell | 11 studies | 28% ± 13% | |
neuron | 8 studies | 47% ± 21% | |
interneuron | 7 studies | 61% ± 28% | |
macrophage | 7 studies | 27% ± 9% | |
retinal ganglion cell | 6 studies | 50% ± 14% | |
amacrine cell | 6 studies | 26% ± 6% | |
retinal cone cell | 6 studies | 39% ± 27% | |
B cell | 6 studies | 29% ± 8% | |
fibroblast | 6 studies | 26% ± 9% | |
endothelial cell of lymphatic vessel | 6 studies | 39% ± 8% | |
smooth muscle cell | 6 studies | 22% ± 5% | |
pericyte | 5 studies | 31% ± 17% | |
plasma cell | 5 studies | 32% ± 15% | |
retina horizontal cell | 5 studies | 31% ± 17% | |
abnormal cell | 5 studies | 28% ± 12% | |
type I pneumocyte | 5 studies | 27% ± 5% | |
granule cell | 4 studies | 68% ± 8% | |
Mueller cell | 4 studies | 38% ± 9% | |
OFF-bipolar cell | 4 studies | 41% ± 17% | |
GABAergic interneuron | 3 studies | 70% ± 5% | |
epithelial cell | 3 studies | 35% ± 12% | |
glial cell | 3 studies | 30% ± 10% | |
progenitor cell | 3 studies | 53% ± 26% | |
vein endothelial cell | 3 studies | 28% ± 14% | |
GABAergic amacrine cell | 3 studies | 43% ± 6% | |
ON-bipolar cell | 3 studies | 33% ± 10% | |
glycinergic amacrine cell | 3 studies | 32% ± 4% | |
endothelial cell of vascular tree | 3 studies | 31% ± 12% | |
neural progenitor cell | 3 studies | 50% ± 18% | |
connective tissue cell | 3 studies | 16% ± 1% | |
ependymal cell | 3 studies | 59% ± 14% | |
T cell | 3 studies | 18% ± 0% | |
lymphocyte | 3 studies | 26% ± 3% | |
adipocyte | 3 studies | 19% ± 1% | |
cardiac muscle cell | 3 studies | 20% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 1861.35 | 2632 / 2642 | 100% | 10.33 | 702 / 705 |
ovary | 100% | 4155.79 | 180 / 180 | 99% | 16.16 | 424 / 430 |
prostate | 100% | 1061.31 | 244 / 245 | 97% | 12.23 | 487 / 502 |
thymus | 100% | 1264.31 | 652 / 653 | 95% | 7.77 | 572 / 605 |
lung | 100% | 1027.99 | 576 / 578 | 83% | 4.39 | 962 / 1155 |
kidney | 99% | 1022.08 | 88 / 89 | 82% | 8.23 | 743 / 901 |
uterus | 99% | 1422.95 | 169 / 170 | 81% | 4.48 | 371 / 459 |
esophagus | 85% | 610.46 | 1230 / 1445 | 93% | 5.95 | 171 / 183 |
adrenal gland | 97% | 524.79 | 250 / 258 | 80% | 8.64 | 185 / 230 |
breast | 100% | 809.87 | 457 / 459 | 77% | 3.93 | 856 / 1118 |
skin | 76% | 607.95 | 1371 / 1809 | 94% | 8.89 | 442 / 472 |
bladder | 100% | 906.10 | 21 / 21 | 65% | 2.79 | 328 / 504 |
intestine | 91% | 714.66 | 879 / 966 | 70% | 2.99 | 368 / 527 |
stomach | 56% | 405.72 | 201 / 359 | 77% | 3.40 | 219 / 286 |
pancreas | 32% | 111.56 | 105 / 328 | 92% | 5.20 | 164 / 178 |
spleen | 100% | 1791.03 | 241 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1305.46 | 1334 / 1335 | 0% | 0 | 0 / 0 |
adipose | 100% | 913.58 | 1200 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 93% | 4.99 | 27 / 29 |
heart | 91% | 560.52 | 786 / 861 | 0% | 0 | 0 / 0 |
muscle | 79% | 484.22 | 636 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 79% | 4.40 | 63 / 80 |
tonsil | 0% | 0 | 0 / 0 | 64% | 2.74 | 29 / 45 |
peripheral blood | 29% | 361.04 | 269 / 929 | 0% | 0 | 0 / 0 |
liver | 10% | 32.51 | 23 / 226 | 15% | 0.60 | 59 / 406 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_1900737 | Biological process | negative regulation of phospholipase C-activating G protein-coupled receptor signaling pathway |
GO_0034063 | Biological process | stress granule assembly |
GO_1900276 | Biological process | regulation of proteinase activated receptor activity |
GO_0006396 | Biological process | RNA processing |
GO_0033365 | Biological process | protein localization to organelle |
GO_0072385 | Biological process | minus-end-directed organelle transport along microtubule |
GO_0048260 | Biological process | positive regulation of receptor-mediated endocytosis |
GO_0072393 | Biological process | microtubule anchoring at microtubule organizing center |
GO_1904781 | Biological process | positive regulation of protein localization to centrosome |
GO_0009653 | Biological process | anatomical structure morphogenesis |
GO_0008298 | Biological process | intracellular mRNA localization |
GO_0016032 | Biological process | viral process |
GO_0070507 | Biological process | regulation of microtubule cytoskeleton organization |
GO_0005856 | Cellular component | cytoskeleton |
GO_0031410 | Cellular component | cytoplasmic vesicle |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0016020 | Cellular component | membrane |
GO_0005813 | Cellular component | centrosome |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0005802 | Cellular component | trans-Golgi network |
GO_0099503 | Cellular component | secretory vesicle |
GO_0005829 | Cellular component | cytosol |
GO_0005881 | Cellular component | cytoplasmic microtubule |
GO_0034452 | Molecular function | dynactin binding |
GO_0005200 | Molecular function | structural constituent of cytoskeleton |
GO_0031871 | Molecular function | proteinase activated receptor binding |
GO_0019901 | Molecular function | protein kinase binding |
GO_0031267 | Molecular function | small GTPase binding |
GO_0070840 | Molecular function | dynein complex binding |
GO_0045505 | Molecular function | dynein intermediate chain binding |
GO_0008093 | Molecular function | cytoskeletal anchor activity |
GO_0005515 | Molecular function | protein binding |
Gene name | BICD1 |
Protein name | BICD cargo adaptor 1 Protein bicaudal D homolog 1 (Bic-D 1) BICD cargo adaptor 1 (BICD1 protein) |
Synonyms | |
Description | FUNCTION: Regulates coat complex coatomer protein I (COPI)-independent Golgi-endoplasmic reticulum transport by recruiting the dynein-dynactin motor complex. |
Accessions | Q96G01 ENST00000652176.1 [Q96G01-1] ENST00000552160.2 ENST00000550207.1 U3KQF7 ENST00000551086.1 ENST00000551848.1 [Q96G01-2] ENST00000547680.2 F8VZX7 F8W056 ENST00000395758.3 A0A087WYJ7 A8MVZ6 ENST00000548411.6 [Q96G01-4] |