Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 41 studies | 44% ± 22% | |
pericyte | 34 studies | 63% ± 27% | |
smooth muscle cell | 24 studies | 53% ± 22% | |
endothelial cell | 14 studies | 25% ± 13% | |
connective tissue cell | 12 studies | 47% ± 21% | |
myofibroblast cell | 10 studies | 71% ± 20% | |
adventitial cell | 4 studies | 50% ± 6% | |
endothelial cell of artery | 4 studies | 31% ± 13% | |
hepatic stellate cell | 3 studies | 22% ± 5% | |
podocyte | 3 studies | 32% ± 6% | |
abnormal cell | 3 studies | 41% ± 19% | |
oligodendrocyte precursor cell | 3 studies | 25% ± 8% | |
chondrocyte | 3 studies | 46% ± 32% |
Insufficient scRNA-seq data for expression of BGN at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 100% | 52237.81 | 577 / 578 | 92% | 789.65 | 1062 / 1155 |
thymus | 99% | 29998.75 | 647 / 653 | 82% | 419.99 | 498 / 605 |
prostate | 95% | 22030.78 | 232 / 245 | 83% | 389.18 | 417 / 502 |
breast | 78% | 12552.80 | 359 / 459 | 97% | 1182.40 | 1084 / 1118 |
kidney | 97% | 33517.48 | 86 / 89 | 76% | 994.18 | 682 / 901 |
adrenal gland | 98% | 24718.90 | 253 / 258 | 73% | 401.26 | 168 / 230 |
uterus | 93% | 25980.48 | 158 / 170 | 72% | 634.79 | 332 / 459 |
skin | 77% | 16184.92 | 1388 / 1809 | 79% | 504.18 | 374 / 472 |
liver | 97% | 20966.40 | 219 / 226 | 54% | 304.97 | 221 / 406 |
bladder | 67% | 12802.71 | 14 / 21 | 69% | 489.56 | 349 / 504 |
ovary | 52% | 8565.69 | 93 / 180 | 81% | 549.42 | 347 / 430 |
esophagus | 39% | 5301.18 | 561 / 1445 | 84% | 666.71 | 154 / 183 |
pancreas | 20% | 2357.45 | 67 / 328 | 95% | 1541.40 | 169 / 178 |
intestine | 36% | 4707.09 | 348 / 966 | 72% | 467.47 | 377 / 527 |
blood vessel | 100% | 273375.71 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 41921.91 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 302.41 | 1 / 1 |
stomach | 19% | 2825.86 | 68 / 359 | 77% | 585.69 | 221 / 286 |
heart | 92% | 41132.28 | 792 / 861 | 0% | 0 | 0 / 0 |
adipose | 82% | 15989.97 | 991 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 76% | 296.08 | 61 / 80 |
lymph node | 0% | 0 | 0 / 0 | 66% | 308.57 | 19 / 29 |
tonsil | 0% | 0 | 0 / 0 | 62% | 356.69 | 28 / 45 |
brain | 6% | 546.31 | 161 / 2642 | 44% | 212.62 | 309 / 705 |
muscle | 4% | 491.92 | 31 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 1% | 61.25 | 5 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0008150 | Biological process | biological_process |
GO_0061975 | Biological process | articular cartilage development |
GO_0060348 | Biological process | bone development |
GO_0005615 | Cellular component | extracellular space |
GO_0005576 | Cellular component | extracellular region |
GO_0005796 | Cellular component | Golgi lumen |
GO_0042383 | Cellular component | sarcolemma |
GO_0070062 | Cellular component | extracellular exosome |
GO_0062023 | Cellular component | collagen-containing extracellular matrix |
GO_0031012 | Cellular component | extracellular matrix |
GO_0009986 | Cellular component | cell surface |
GO_0030133 | Cellular component | transport vesicle |
GO_0043202 | Cellular component | lysosomal lumen |
GO_0005201 | Molecular function | extracellular matrix structural constituent |
GO_0019955 | Molecular function | cytokine binding |
GO_0030021 | Molecular function | extracellular matrix structural constituent conferring compression resistance |
GO_0005539 | Molecular function | glycosaminoglycan binding |
GO_0050840 | Molecular function | extracellular matrix binding |
GO_0005515 | Molecular function | protein binding |
Gene name | BGN |
Protein name | Biglycan (Bone/cartilage proteoglycan I) (PG-S1) Biglycan |
Synonyms | SLRR1A |
Description | FUNCTION: May be involved in collagen fiber assembly. . FUNCTION: May be involved in collagen fiber assembly. . |
Accessions | P21810 ENST00000431891.1 C9JKG1 ENST00000331595.9 |