Name | Number of supported studies | Average coverage | |
---|---|---|---|
glutamatergic neuron | 7 studies | 42% ± 24% | |
GABAergic neuron | 6 studies | 47% ± 21% | |
retinal bipolar neuron | 4 studies | 27% ± 6% | |
ON-bipolar cell | 4 studies | 23% ± 7% | |
oligodendrocyte precursor cell | 4 studies | 28% ± 6% | |
retinal ganglion cell | 3 studies | 40% ± 17% | |
amacrine cell | 3 studies | 22% ± 3% | |
retina horizontal cell | 3 studies | 16% ± 1% | |
rod bipolar cell | 3 studies | 23% ± 3% | |
granule cell | 3 studies | 27% ± 3% | |
astrocyte | 3 studies | 27% ± 11% | |
interneuron | 3 studies | 59% ± 15% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 6 studies | 38% ± 20% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 2576.05 | 2640 / 2642 | 100% | 16.10 | 702 / 705 |
uterus | 80% | 267.70 | 136 / 170 | 58% | 2.14 | 268 / 459 |
prostate | 57% | 162.70 | 140 / 245 | 59% | 1.02 | 295 / 502 |
bladder | 62% | 242.81 | 13 / 21 | 48% | 1.54 | 241 / 504 |
ovary | 54% | 152.73 | 98 / 180 | 49% | 1.18 | 211 / 430 |
ureter | 0% | 0 | 0 / 0 | 100% | 2.65 | 1 / 1 |
adrenal gland | 11% | 30.28 | 29 / 258 | 79% | 5.11 | 182 / 230 |
lung | 11% | 25.32 | 61 / 578 | 63% | 1.95 | 732 / 1155 |
skin | 30% | 217.98 | 544 / 1809 | 41% | 1.21 | 195 / 472 |
pancreas | 0% | 0.47 | 1 / 328 | 70% | 1.71 | 125 / 178 |
breast | 5% | 13.95 | 25 / 459 | 64% | 1.60 | 715 / 1118 |
esophagus | 6% | 13.27 | 93 / 1445 | 52% | 1.80 | 96 / 183 |
thymus | 14% | 30.21 | 92 / 653 | 45% | 1.26 | 271 / 605 |
kidney | 10% | 21.24 | 9 / 89 | 37% | 0.95 | 336 / 901 |
tonsil | 0% | 0 | 0 / 0 | 47% | 0.95 | 21 / 45 |
intestine | 31% | 81.02 | 299 / 966 | 14% | 0.32 | 72 / 527 |
stomach | 6% | 13.11 | 23 / 359 | 24% | 0.48 | 70 / 286 |
adipose | 30% | 86.87 | 358 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 25% | 65.07 | 340 / 1335 | 0% | 0 | 0 / 0 |
heart | 14% | 31.32 | 123 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 13% | 0.22 | 10 / 80 |
liver | 0% | 0 | 0 / 226 | 4% | 0.12 | 16 / 406 |
peripheral blood | 3% | 6.83 | 31 / 929 | 0% | 0 | 0 / 0 |
muscle | 1% | 1.50 | 6 / 803 | 0% | 0 | 0 / 0 |
spleen | 0% | 0.65 | 1 / 241 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0045666 | Biological process | positive regulation of neuron differentiation |
GO_0045746 | Biological process | negative regulation of Notch signaling pathway |
GO_0045892 | Biological process | negative regulation of DNA-templated transcription |
GO_0007399 | Biological process | nervous system development |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_0003714 | Molecular function | transcription corepressor activity |
GO_0003682 | Molecular function | chromatin binding |
Gene name | BEND6 |
Protein name | BEN domain containing 6 BEN domain-containing protein 6 |
Synonyms | C6orf65 |
Description | FUNCTION: Acts as a corepressor of recombining binding protein suppressor hairless (RBPJ) and inhibits Notch signaling in neural stem cells, thereby opposing their self-renewal and promoting neurogenesis . . |
Accessions | ENST00000370748.7 [Q5SZJ8-2] ENST00000370746.8 [Q5SZJ8-1] ENST00000370745.1 Q5SZJ8 Q5SZK0 |