Name | Number of supported studies | Average coverage | |
---|---|---|---|
macrophage | 22 studies | 32% ± 15% | |
microglial cell | 9 studies | 28% ± 9% | |
oligodendrocyte precursor cell | 9 studies | 30% ± 13% | |
myeloid cell | 9 studies | 33% ± 10% | |
GABAergic neuron | 8 studies | 38% ± 22% | |
dendritic cell | 6 studies | 20% ± 3% | |
interneuron | 5 studies | 41% ± 23% | |
type II pneumocyte | 5 studies | 20% ± 4% | |
endothelial cell of lymphatic vessel | 4 studies | 24% ± 10% | |
neuron | 4 studies | 25% ± 7% | |
retinal bipolar neuron | 4 studies | 34% ± 4% | |
OFF-bipolar cell | 4 studies | 44% ± 16% | |
glutamatergic neuron | 4 studies | 49% ± 18% | |
oligodendrocyte | 4 studies | 29% ± 8% | |
hematopoietic precursor cell | 3 studies | 23% ± 5% | |
endothelial cell | 3 studies | 25% ± 12% | |
GABAergic interneuron | 3 studies | 21% ± 2% | |
ON-bipolar cell | 3 studies | 41% ± 12% | |
retinal ganglion cell | 3 studies | 41% ± 14% | |
retinal pigment epithelial cell | 3 studies | 29% ± 12% | |
mononuclear phagocyte | 3 studies | 29% ± 9% | |
non-classical monocyte | 3 studies | 17% ± 2% | |
astrocyte | 3 studies | 22% ± 10% | |
hematopoietic stem cell | 3 studies | 34% ± 11% | |
megakaryocyte-erythroid progenitor cell | 3 studies | 41% ± 11% | |
type I pneumocyte | 3 studies | 24% ± 4% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 6 studies | 37% ± 12% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 98% | 2884.10 | 176 / 180 | 90% | 85.30 | 386 / 430 |
lung | 100% | 4241.72 | 576 / 578 | 84% | 23.09 | 971 / 1155 |
pancreas | 100% | 8400.41 | 328 / 328 | 82% | 12.88 | 146 / 178 |
bladder | 100% | 1984.71 | 21 / 21 | 54% | 10.69 | 271 / 504 |
brain | 84% | 1603.55 | 2213 / 2642 | 66% | 16.93 | 463 / 705 |
uterus | 96% | 1702.44 | 163 / 170 | 48% | 23.28 | 220 / 459 |
breast | 80% | 949.85 | 367 / 459 | 62% | 7.39 | 694 / 1118 |
esophagus | 73% | 923.42 | 1055 / 1445 | 66% | 15.05 | 121 / 183 |
adrenal gland | 97% | 1468.97 | 250 / 258 | 35% | 9.85 | 81 / 230 |
intestine | 88% | 1398.94 | 851 / 966 | 30% | 3.73 | 159 / 527 |
thymus | 57% | 480.47 | 372 / 653 | 55% | 6.25 | 331 / 605 |
stomach | 59% | 619.23 | 211 / 359 | 41% | 5.00 | 118 / 286 |
ureter | 0% | 0 | 0 / 0 | 100% | 26.72 | 1 / 1 |
adipose | 98% | 2211.77 | 1184 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 92% | 1339.95 | 1225 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 90% | 30.60 | 26 / 29 |
spleen | 74% | 726.94 | 178 / 241 | 0% | 0 | 0 / 0 |
skin | 37% | 2864.03 | 661 / 1809 | 32% | 5.53 | 152 / 472 |
peripheral blood | 68% | 2526.86 | 635 / 929 | 0% | 0 | 0 / 0 |
kidney | 16% | 126.64 | 14 / 89 | 46% | 5.32 | 418 / 901 |
prostate | 43% | 320.40 | 106 / 245 | 7% | 0.94 | 33 / 502 |
tonsil | 0% | 0 | 0 / 0 | 44% | 4.20 | 20 / 45 |
heart | 40% | 341.13 | 343 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 16% | 1.30 | 13 / 80 |
liver | 5% | 37.88 | 11 / 226 | 8% | 1.39 | 31 / 406 |
muscle | 9% | 56.04 | 76 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0009099 | Biological process | valine biosynthetic process |
GO_0009098 | Biological process | L-leucine biosynthetic process |
GO_0006629 | Biological process | lipid metabolic process |
GO_0000082 | Biological process | G1/S transition of mitotic cell cycle |
GO_0009082 | Biological process | branched-chain amino acid biosynthetic process |
GO_0005829 | Cellular component | cytosol |
GO_0005739 | Cellular component | mitochondrion |
GO_0052655 | Molecular function | L-valine transaminase activity |
GO_0052654 | Molecular function | L-leucine transaminase activity |
GO_0052656 | Molecular function | L-isoleucine transaminase activity |
GO_0004084 | Molecular function | branched-chain-amino-acid transaminase activity |
GO_0050048 | Molecular function | L-leucine:2-oxoglutarate aminotransferase activity |
Gene name | BCAT1 |
Protein name | branched-chain-amino-acid transaminase (EC 2.6.1.42) Alternative protein BCAT1 Branched-chain-amino-acid aminotransferase (EC 2.6.1.42) Branched-chain-amino-acid aminotransferase, cytosolic (BCAT(c)) (EC 2.6.1.42) (Protein ECA39) |
Synonyms | ECA39 BCT1 |
Description | FUNCTION: Catalyzes the first reaction in the catabolism of the essential branched chain amino acids leucine, isoleucine, and valine. |
Accessions | ENST00000546285.1 ENST00000612790.1 ENST00000342945.9 [P54687-2] A0A087WYF2 F5H2F2 P54687 ENST00000538118.5 [P54687-4] L8E7S9 ENST00000539780.5 [P54687-3] ENST00000261192.12 [P54687-1] ENST00000539282.5 [P54687-5] |