Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 13 studies | 23% ± 7% | |
fibroblast | 8 studies | 22% ± 6% | |
smooth muscle cell | 8 studies | 18% ± 3% | |
endothelial cell of lymphatic vessel | 6 studies | 18% ± 3% | |
epithelial cell | 5 studies | 30% ± 12% | |
macrophage | 5 studies | 19% ± 2% | |
type I pneumocyte | 5 studies | 19% ± 3% | |
pericyte | 4 studies | 20% ± 4% | |
oligodendrocyte | 4 studies | 20% ± 4% | |
classical monocyte | 3 studies | 21% ± 2% | |
capillary endothelial cell | 3 studies | 18% ± 1% | |
basal cell | 3 studies | 24% ± 7% | |
mesothelial cell | 3 studies | 19% ± 2% | |
endothelial cell of vascular tree | 3 studies | 21% ± 2% | |
muscle cell | 3 studies | 25% ± 6% | |
GABAergic neuron | 3 studies | 21% ± 4% | |
glutamatergic neuron | 3 studies | 29% ± 7% | |
dendritic cell | 3 studies | 29% ± 6% | |
astrocyte | 3 studies | 20% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 8091.75 | 459 / 459 | 100% | 66.67 | 1118 / 1118 |
esophagus | 100% | 9613.32 | 1445 / 1445 | 100% | 63.31 | 183 / 183 |
ovary | 100% | 5386.79 | 180 / 180 | 100% | 42.95 | 430 / 430 |
uterus | 100% | 8232.42 | 170 / 170 | 100% | 44.99 | 457 / 459 |
thymus | 100% | 6069.33 | 652 / 653 | 99% | 41.62 | 601 / 605 |
lung | 100% | 6712.93 | 577 / 578 | 99% | 45.06 | 1146 / 1155 |
prostate | 100% | 5364.44 | 244 / 245 | 99% | 41.68 | 498 / 502 |
adrenal gland | 100% | 6245.98 | 258 / 258 | 99% | 35.06 | 227 / 230 |
intestine | 100% | 7246.17 | 966 / 966 | 98% | 33.15 | 517 / 527 |
kidney | 99% | 3396.52 | 88 / 89 | 99% | 43.85 | 891 / 901 |
skin | 100% | 8107.77 | 1809 / 1809 | 97% | 37.86 | 459 / 472 |
bladder | 100% | 9717.48 | 21 / 21 | 96% | 33.63 | 484 / 504 |
stomach | 98% | 5226.91 | 353 / 359 | 98% | 37.56 | 279 / 286 |
pancreas | 95% | 3022.03 | 313 / 328 | 98% | 43.64 | 174 / 178 |
liver | 95% | 3209.88 | 214 / 226 | 95% | 23.29 | 387 / 406 |
brain | 72% | 1652.58 | 1909 / 2642 | 97% | 30.43 | 687 / 705 |
adipose | 100% | 9939.65 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 18276.57 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 4058.44 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 54.22 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 19.11 | 1 / 1 |
lymph node | 0% | 0 | 0 / 0 | 93% | 25.94 | 27 / 29 |
eye | 0% | 0 | 0 / 0 | 79% | 15.58 | 63 / 80 |
heart | 79% | 2129.45 | 676 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 60% | 1894.89 | 555 / 929 | 0% | 0 | 0 / 0 |
muscle | 38% | 752.08 | 302 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007029 | Biological process | endoplasmic reticulum organization |
GO_0051260 | Biological process | protein homooligomerization |
GO_0007030 | Biological process | Golgi organization |
GO_0006888 | Biological process | endoplasmic reticulum to Golgi vesicle-mediated transport |
GO_1903373 | Biological process | positive regulation of endoplasmic reticulum tubular network organization |
GO_0071782 | Cellular component | endoplasmic reticulum tubular network |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0098826 | Cellular component | endoplasmic reticulum tubular network membrane |
GO_0016020 | Cellular component | membrane |
GO_0005525 | Molecular function | GTP binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0005515 | Molecular function | protein binding |
GO_0003924 | Molecular function | GTPase activity |
Gene name | ATL3 |
Protein name | Atlastin-3 (EC 3.6.5.-) Atlastin GTPase 3 |
Synonyms | |
Description | FUNCTION: GTPase tethering membranes through formation of trans-homooligomers and mediating homotypic fusion of endoplasmic reticulum membranes. Functions in endoplasmic reticulum tubular network biogenesis . . |
Accessions | F5H6I7 ENST00000398868.8 F5GWF8 ENST00000540699.1 Q6DD88 ENST00000538786.1 |