Name | Number of supported studies | Average coverage | |
---|---|---|---|
glutamatergic neuron | 9 studies | 53% ± 23% | |
retinal rod cell | 8 studies | 54% ± 26% | |
retinal cone cell | 8 studies | 73% ± 24% | |
ciliated cell | 8 studies | 33% ± 14% | |
GABAergic neuron | 7 studies | 41% ± 22% | |
endothelial cell | 7 studies | 41% ± 15% | |
type II pneumocyte | 6 studies | 38% ± 12% | |
astrocyte | 6 studies | 29% ± 12% | |
fibroblast | 6 studies | 28% ± 11% | |
neuron | 5 studies | 33% ± 17% | |
retinal pigment epithelial cell | 4 studies | 40% ± 12% | |
mesothelial cell | 4 studies | 23% ± 4% | |
interneuron | 4 studies | 40% ± 15% | |
microglial cell | 3 studies | 30% ± 15% | |
epithelial cell | 3 studies | 33% ± 20% | |
ependymal cell | 3 studies | 38% ± 8% | |
macrophage | 3 studies | 20% ± 2% | |
club cell | 3 studies | 24% ± 4% | |
smooth muscle cell | 3 studies | 31% ± 13% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 955.52 | 244 / 245 | 98% | 5.26 | 493 / 502 |
thymus | 100% | 911.63 | 650 / 653 | 98% | 7.76 | 591 / 605 |
ovary | 100% | 2037.61 | 180 / 180 | 97% | 6.58 | 416 / 430 |
adrenal gland | 100% | 2524.34 | 258 / 258 | 96% | 11.45 | 220 / 230 |
lung | 98% | 948.12 | 565 / 578 | 92% | 6.66 | 1065 / 1155 |
brain | 92% | 769.18 | 2418 / 2642 | 98% | 5.73 | 693 / 705 |
kidney | 99% | 648.33 | 88 / 89 | 86% | 5.03 | 777 / 901 |
intestine | 96% | 1657.63 | 925 / 966 | 87% | 4.03 | 458 / 527 |
breast | 83% | 510.19 | 382 / 459 | 97% | 9.11 | 1090 / 1118 |
pancreas | 85% | 368.61 | 279 / 328 | 96% | 6.79 | 170 / 178 |
bladder | 100% | 1246.62 | 21 / 21 | 80% | 3.81 | 401 / 504 |
stomach | 86% | 1210.52 | 310 / 359 | 90% | 4.58 | 256 / 286 |
skin | 75% | 680.47 | 1364 / 1809 | 99% | 16.43 | 467 / 472 |
uterus | 99% | 2620.29 | 168 / 170 | 70% | 4.74 | 323 / 459 |
esophagus | 79% | 2674.04 | 1141 / 1445 | 83% | 4.15 | 151 / 183 |
ureter | 0% | 0 | 0 / 0 | 100% | 2.64 | 1 / 1 |
blood vessel | 99% | 1331.16 | 1327 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 98% | 31.74 | 78 / 80 |
adipose | 71% | 318.11 | 859 / 1204 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 58% | 2.29 | 26 / 45 |
lymph node | 0% | 0 | 0 / 0 | 34% | 1.18 | 10 / 29 |
heart | 34% | 120.30 | 291 / 861 | 0% | 0 | 0 / 0 |
liver | 5% | 15.61 | 11 / 226 | 18% | 0.93 | 72 / 406 |
spleen | 22% | 69.51 | 54 / 241 | 0% | 0 | 0 / 0 |
peripheral blood | 19% | 257.15 | 174 / 929 | 0% | 0 | 0 / 0 |
muscle | 5% | 19.11 | 40 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0045880 | Biological process | positive regulation of smoothened signaling pathway |
GO_0060271 | Biological process | cilium assembly |
GO_0005814 | Cellular component | centriole |
GO_0097542 | Cellular component | ciliary tip |
GO_0070062 | Cellular component | extracellular exosome |
GO_0036064 | Cellular component | ciliary basal body |
GO_0005737 | Cellular component | cytoplasm |
GO_0005515 | Molecular function | protein binding |
Gene name | ARMC9 |
Protein name | Armadillo repeat containing 9 LisH domain-containing protein ARMC9 (Armadillo repeat-containing protein 9) (Melanoma/melanocyte-specific tumor antigen KU-MEL-1) (NS21) LisH domain-containing protein ARMC9 |
Synonyms | KIAA1868 |
Description | FUNCTION: Involved in ciliogenesis . It is required for appropriate acetylation and polyglutamylation of ciliary microtubules, and regulation of cilium length . Acts as a positive regulator of hedgehog (Hh)signaling (By similarity). May participate in the trafficking and/or retention of GLI2 and GLI3 proteins at the ciliary tip (By similarity). . |
Accessions | A0A804HK85 A0A804HIT2 ENST00000440107.6 ENST00000436339.6 ENST00000684565.1 ENST00000683112.1 C9JW07 A0A804HIU9 ENST00000683575.1 A0A804HIH2 ENST00000682334.1 ENST00000683321.1 ENST00000682367.1 ENST00000683271.1 A0A804HLH5 ENST00000349938.8 ENST00000684432.1 ENST00000428662.6 ENST00000683553.1 ENST00000684368.1 A0A804HJ52 ENST00000683040.1 ENST00000682100.1 ENST00000683702.1 ENST00000684051.1 ENST00000683275.1 ENST00000683063.1 ENST00000682030.1 ENST00000682264.1 A0A804HJI1 A0A804HJ95 A0A804HHZ1 H7BZY2 A0A804HL13 H7BZA2 A0A804HK42 ENST00000684718.1 ENST00000611582.5 [Q7Z3E5-1] A0A2Q3DP09 ENST00000682002.1 ENST00000683629.1 ENST00000683966.1 Q7Z3E5 A0A804HI20 |