Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell of artery | 4 studies | 19% ± 2% |
Insufficient scRNA-seq data for expression of ARC at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 92% | 1777.98 | 2427 / 2642 | 100% | 86.37 | 702 / 705 |
skin | 78% | 957.74 | 1402 / 1809 | 42% | 5.51 | 199 / 472 |
lung | 94% | 1186.35 | 543 / 578 | 17% | 1.00 | 193 / 1155 |
adrenal gland | 31% | 574.77 | 80 / 258 | 71% | 351.83 | 163 / 230 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.91 | 1 / 1 |
kidney | 51% | 204.97 | 45 / 89 | 30% | 1.72 | 273 / 901 |
thymus | 24% | 114.79 | 154 / 653 | 51% | 9.00 | 309 / 605 |
breast | 40% | 122.24 | 182 / 459 | 33% | 3.19 | 368 / 1118 |
adipose | 57% | 925.20 | 692 / 1204 | 0% | 0 | 0 / 0 |
uterus | 29% | 100.64 | 50 / 170 | 26% | 2.18 | 121 / 459 |
stomach | 36% | 910.70 | 129 / 359 | 14% | 1.09 | 39 / 286 |
esophagus | 18% | 114.64 | 254 / 1445 | 31% | 2.66 | 57 / 183 |
ovary | 12% | 27.90 | 21 / 180 | 35% | 4.00 | 150 / 430 |
prostate | 18% | 60.29 | 45 / 245 | 24% | 1.14 | 121 / 502 |
intestine | 26% | 151.37 | 252 / 966 | 15% | 1.17 | 79 / 527 |
eye | 0% | 0 | 0 / 0 | 38% | 3.92 | 30 / 80 |
bladder | 14% | 53.05 | 3 / 21 | 13% | 0.81 | 65 / 504 |
pancreas | 1% | 3.50 | 2 / 328 | 24% | 3.67 | 42 / 178 |
heart | 18% | 100.02 | 155 / 861 | 0% | 0 | 0 / 0 |
blood vessel | 13% | 61.98 | 172 / 1335 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 11% | 0.53 | 5 / 45 |
spleen | 10% | 44.73 | 23 / 241 | 0% | 0 | 0 / 0 |
liver | 2% | 20.57 | 5 / 226 | 2% | 0.17 | 9 / 406 |
peripheral blood | 2% | 5.63 | 17 / 929 | 0% | 0 | 0 / 0 |
muscle | 1% | 7.78 | 10 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0051260 | Biological process | protein homooligomerization |
GO_0050804 | Biological process | modulation of chemical synaptic transmission |
GO_0006897 | Biological process | endocytosis |
GO_0043278 | Biological process | response to morphine |
GO_1900271 | Biological process | regulation of long-term synaptic potentiation |
GO_0051028 | Biological process | mRNA transport |
GO_0007612 | Biological process | learning |
GO_1900452 | Biological process | regulation of long-term synaptic depression |
GO_0007616 | Biological process | long-term memory |
GO_0022604 | Biological process | regulation of cell morphogenesis |
GO_0007010 | Biological process | cytoskeleton organization |
GO_0110077 | Biological process | vesicle-mediated intercellular transport |
GO_0060291 | Biological process | long-term synaptic potentiation |
GO_0045471 | Biological process | response to ethanol |
GO_0007492 | Biological process | endoderm development |
GO_0048168 | Biological process | regulation of neuronal synaptic plasticity |
GO_0061001 | Biological process | regulation of dendritic spine morphogenesis |
GO_0099149 | Biological process | regulation of postsynaptic neurotransmitter receptor internalization |
GO_0009952 | Biological process | anterior/posterior pattern specification |
GO_0016477 | Biological process | cell migration |
GO_0060997 | Biological process | dendritic spine morphogenesis |
GO_0098978 | Cellular component | glutamatergic synapse |
GO_0098839 | Cellular component | postsynaptic density membrane |
GO_0001669 | Cellular component | acrosomal vesicle |
GO_0005886 | Cellular component | plasma membrane |
GO_0045121 | Cellular component | membrane raft |
GO_0043197 | Cellular component | dendritic spine |
GO_0031901 | Cellular component | early endosome membrane |
GO_1903561 | Cellular component | extracellular vesicle |
GO_0043025 | Cellular component | neuronal cell body |
GO_0015629 | Cellular component | actin cytoskeleton |
GO_0005829 | Cellular component | cytosol |
GO_0005938 | Cellular component | cell cortex |
GO_0170047 | Cellular component | virus-like capsid |
GO_0071598 | Cellular component | neuronal ribonucleoprotein granule |
GO_0005737 | Cellular component | cytoplasm |
GO_0030665 | Cellular component | clathrin-coated vesicle membrane |
GO_0098845 | Cellular component | postsynaptic endosome |
GO_0003729 | Molecular function | mRNA binding |
GO_0005198 | Molecular function | structural molecule activity |
GO_0005515 | Molecular function | protein binding |
Gene name | ARC |
Protein name | Activity-regulated cytoskeleton-associated protein (hArc) (Activity-regulated gene 3.1 protein homolog) (ARC/ARG3.1) (Arg3.1) |
Synonyms | KIAA0278 |
Description | FUNCTION: Master regulator of synaptic plasticity that self-assembles into virion-like capsids that encapsulate RNAs and mediate intercellular RNA transfer in the nervous system. ARC protein is released from neurons in extracellular vesicles that mediate the transfer of ARC mRNA into new target cells, where ARC mRNA can undergo activity-dependent translation. ARC capsids are endocytosed and are able to transfer ARC mRNA into the cytoplasm of neurons. Acts as a key regulator of synaptic plasticity: required for protein synthesis-dependent forms of long-term potentiation (LTP) and depression (LTD) and for the formation of long-term memory. Regulates synaptic plasticity by promoting endocytosis of AMPA receptors (AMPARs) in response to synaptic activity: this endocytic pathway maintains levels of surface AMPARs in response to chronic changes in neuronal activity through synaptic scaling, thereby contributing to neuronal homeostasis. Acts as a postsynaptic mediator of activity-dependent synapse elimination in the developing cerebellum by mediating elimination of surplus climbing fiber synapses. Accumulates at weaker synapses, probably to prevent their undesired enhancement. This suggests that ARC-containing virion-like capsids may be required to eliminate synaptic material. Required to transduce experience into long-lasting changes in visual cortex plasticity and for long-term memory (By similarity). Involved in postsynaptic trafficking and processing of amyloid-beta A4 (APP) via interaction with PSEN1 (By similarity). In addition to its role in synapses, also involved in the regulation of the immune system: specifically expressed in skin-migratory dendritic cells and regulates fast dendritic cell migration, thereby regulating T-cell activation (By similarity). . |
Accessions | ENST00000356613.4 Q7LC44 |