Name | Number of supported studies | Average coverage | |
---|---|---|---|
macrophage | 8 studies | 21% ± 5% | |
non-classical monocyte | 7 studies | 28% ± 10% | |
ciliated cell | 5 studies | 24% ± 4% | |
astrocyte | 4 studies | 24% ± 4% | |
oligodendrocyte | 4 studies | 17% ± 2% | |
classical monocyte | 3 studies | 20% ± 1% | |
myeloid cell | 3 studies | 19% ± 2% | |
GABAergic neuron | 3 studies | 35% ± 5% | |
glutamatergic neuron | 3 studies | 38% ± 8% | |
oligodendrocyte precursor cell | 3 studies | 24% ± 4% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 30% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 1674.38 | 245 / 245 | 100% | 25.21 | 502 / 502 |
brain | 100% | 1522.58 | 2638 / 2642 | 100% | 27.37 | 705 / 705 |
thymus | 100% | 2027.18 | 653 / 653 | 100% | 27.26 | 604 / 605 |
adrenal gland | 100% | 2144.27 | 258 / 258 | 99% | 20.60 | 227 / 230 |
breast | 100% | 1682.95 | 459 / 459 | 97% | 18.27 | 1086 / 1118 |
kidney | 100% | 1009.97 | 89 / 89 | 97% | 12.99 | 870 / 901 |
skin | 99% | 1268.11 | 1795 / 1809 | 97% | 16.74 | 459 / 472 |
ovary | 100% | 1667.42 | 180 / 180 | 93% | 8.33 | 402 / 430 |
lung | 100% | 1507.26 | 577 / 578 | 93% | 8.30 | 1071 / 1155 |
bladder | 100% | 1496.19 | 21 / 21 | 91% | 7.57 | 458 / 504 |
pancreas | 84% | 420.93 | 275 / 328 | 98% | 12.44 | 174 / 178 |
intestine | 100% | 1158.06 | 963 / 966 | 82% | 5.73 | 430 / 527 |
esophagus | 96% | 977.99 | 1383 / 1445 | 84% | 5.73 | 154 / 183 |
stomach | 97% | 744.43 | 347 / 359 | 78% | 5.44 | 224 / 286 |
uterus | 100% | 1727.16 | 170 / 170 | 73% | 5.35 | 333 / 459 |
adipose | 100% | 1642.80 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 18.22 | 29 / 29 |
spleen | 100% | 2334.76 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 4.60 | 1 / 1 |
blood vessel | 100% | 1379.81 | 1333 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 98% | 12.27 | 78 / 80 |
peripheral blood | 95% | 1721.54 | 883 / 929 | 0% | 0 | 0 / 0 |
heart | 92% | 623.71 | 790 / 861 | 0% | 0 | 0 / 0 |
liver | 34% | 130.25 | 76 / 226 | 50% | 3.63 | 204 / 406 |
muscle | 80% | 384.88 | 646 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 73% | 3.99 | 33 / 45 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007220 | Biological process | Notch receptor processing |
GO_0034205 | Biological process | amyloid-beta formation |
GO_0016485 | Biological process | protein processing |
GO_0031293 | Biological process | membrane protein intracellular domain proteolysis |
GO_0010950 | Biological process | positive regulation of endopeptidase activity |
GO_0007219 | Biological process | Notch signaling pathway |
GO_0042987 | Biological process | amyloid precursor protein catabolic process |
GO_0010008 | Cellular component | endosome membrane |
GO_0000139 | Cellular component | Golgi membrane |
GO_0070765 | Cellular component | gamma-secretase complex |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005886 | Cellular component | plasma membrane |
GO_0016020 | Cellular component | membrane |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0030133 | Cellular component | transport vesicle |
GO_0061133 | Molecular function | endopeptidase activator activity |
GO_0030674 | Molecular function | protein-macromolecule adaptor activity |
GO_0005515 | Molecular function | protein binding |
Gene name | APH1B |
Protein name | Gamma-secretase subunit APH-1 (APH-1) Aph-1 homolog B, gamma-secretase subunit Gamma-secretase subunit APH-1B (APH-1b) (Aph-1beta) (Presenilin-stabilization factor-like) |
Synonyms | UNQ688/PRO1328 APH-1b PSFL |
Description | FUNCTION: Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors and APP (amyloid-beta precursor protein). It probably represents a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex. Probably present in a minority of gamma-secretase complexes compared to APH1A. . FUNCTION: Potential subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors. . FUNCTION: Potential subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors. . FUNCTION: Potential subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors. . |
Accessions | ENST00000560890.5 ENST00000560353.1 ENST00000380343.8 [Q8WW43-2] H0YLT0 ENST00000380340.8 H0YM95 H0YKZ9 ENST00000261879.10 [Q8WW43-1] Q4R1J8 Q8WW43 ENST00000559971.5 |