Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 9 studies | 29% ± 14% | |
endothelial cell | 6 studies | 32% ± 11% | |
glutamatergic neuron | 6 studies | 40% ± 18% | |
neuron | 5 studies | 23% ± 4% | |
interneuron | 5 studies | 34% ± 21% | |
oligodendrocyte precursor cell | 5 studies | 25% ± 10% | |
epithelial cell | 4 studies | 22% ± 3% | |
GABAergic neuron | 4 studies | 37% ± 15% | |
microglial cell | 3 studies | 23% ± 8% | |
basal cell | 3 studies | 21% ± 4% | |
pro-B cell | 3 studies | 26% ± 7% | |
endothelial cell of lymphatic vessel | 3 studies | 17% ± 1% | |
fibroblast | 3 studies | 17% ± 1% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 6 studies | 33% ± 11% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 7000.93 | 1445 / 1445 | 100% | 38.20 | 183 / 183 |
ovary | 100% | 7032.48 | 180 / 180 | 100% | 48.96 | 428 / 430 |
thymus | 100% | 7237.06 | 652 / 653 | 100% | 33.67 | 602 / 605 |
adrenal gland | 100% | 7285.67 | 258 / 258 | 99% | 25.49 | 228 / 230 |
uterus | 100% | 8446.15 | 170 / 170 | 99% | 24.85 | 455 / 459 |
breast | 99% | 4396.63 | 456 / 459 | 98% | 18.27 | 1091 / 1118 |
skin | 99% | 7029.34 | 1799 / 1809 | 96% | 16.65 | 453 / 472 |
lung | 99% | 3800.14 | 575 / 578 | 95% | 21.13 | 1103 / 1155 |
brain | 95% | 4115.06 | 2508 / 2642 | 99% | 32.83 | 701 / 705 |
kidney | 100% | 2955.01 | 89 / 89 | 91% | 15.13 | 817 / 901 |
prostate | 100% | 4088.69 | 245 / 245 | 90% | 10.18 | 451 / 502 |
bladder | 100% | 4713.52 | 21 / 21 | 88% | 12.60 | 446 / 504 |
stomach | 98% | 2989.01 | 351 / 359 | 88% | 13.62 | 252 / 286 |
intestine | 98% | 3801.69 | 948 / 966 | 85% | 10.50 | 448 / 527 |
pancreas | 80% | 1413.08 | 264 / 328 | 98% | 18.61 | 174 / 178 |
liver | 69% | 1024.77 | 156 / 226 | 46% | 4.05 | 188 / 406 |
blood vessel | 100% | 7051.66 | 1335 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 5462.26 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 5287.42 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 32.39 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 8.54 | 1 / 1 |
adipose | 99% | 3558.92 | 1195 / 1204 | 0% | 0 | 0 / 0 |
heart | 98% | 3526.09 | 845 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 94% | 12.27 | 75 / 80 |
lymph node | 0% | 0 | 0 / 0 | 79% | 8.39 | 23 / 29 |
peripheral blood | 20% | 359.61 | 186 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0043589 | Biological process | skin morphogenesis |
GO_0001707 | Biological process | mesoderm formation |
GO_0030154 | Biological process | cell differentiation |
GO_0006355 | Biological process | regulation of DNA-templated transcription |
GO_0005694 | Cellular component | chromosome |
GO_0005634 | Cellular component | nucleus |
GO_0003700 | Molecular function | DNA-binding transcription factor activity |
GO_0005515 | Molecular function | protein binding |
GO_0140585 | Molecular function | promoter-enhancer loop anchoring activity |
Gene name | AHDC1 |
Protein name | Transcription factor Gibbin (AT-hook DNA-binding motif-containing protein 1) |
Synonyms | |
Description | FUNCTION: Transcription factor required for the proper patterning of the epidermis, which plays a key role in early epithelial morphogenesis . Directly binds promoter and enhancer regions and acts by maintaining local enhancer-promoter chromatin architecture . Interacts with many sequence-specific zinc-finger transcription factors and methyl-CpG-binding proteins to regulate the expression of mesoderm genes that wire surface ectoderm stratification . . |
Accessions | ENST00000374011.6 ENST00000673934.1 Q5TGY3 ENST00000644989.1 ENST00000642245.1 ENST00000642416.1 ENST00000247087.10 |