ABI3 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
natural killer cell	29 studies	30% ± 8%	Explore
non-classical monocyte	24 studies	43% ± 15%	Explore
CD8-positive, alpha-beta T cell	20 studies	23% ± 5%	Explore
conventional dendritic cell	17 studies	27% ± 12%	Explore
macrophage	16 studies	26% ± 11%	Explore
CD16-positive, CD56-dim natural killer cell, human	13 studies	35% ± 12%	Explore
mature NK T cell	13 studies	28% ± 10%	Explore
monocyte	10 studies	23% ± 6%	Explore
gamma-delta T cell	10 studies	28% ± 9%	Explore
endothelial cell	8 studies	26% ± 12%	Explore
CD8-positive, alpha-beta memory T cell	7 studies	23% ± 6%	Explore
CD16-negative, CD56-bright natural killer cell, human	7 studies	28% ± 10%	Explore
classical monocyte	6 studies	27% ± 8%	Explore
T cell	6 studies	17% ± 2%	Explore
dendritic cell	6 studies	39% ± 17%	Explore
microglial cell	5 studies	31% ± 13%	Explore
effector CD8-positive, alpha-beta T cell	5 studies	28% ± 7%	Explore
vein endothelial cell	4 studies	20% ± 3%	Explore
B cell	4 studies	18% ± 2%	Explore
memory B cell	4 studies	20% ± 2%	Explore
capillary endothelial cell	4 studies	21% ± 6%	Explore
myeloid cell	4 studies	28% ± 9%	Explore
mucosal invariant T cell	4 studies	19% ± 2%	Explore
mononuclear phagocyte	3 studies	37% ± 20%	Explore
leukocyte	3 studies	28% ± 8%	Explore
endothelial cell of vascular tree	3 studies	18% ± 2%	Explore
exhausted T cell	3 studies	25% ± 2%	Explore
intermediate monocyte	3 studies	34% ± 12%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
peripheral blood	4 studies	19% ± 1%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
thymus	100%	800.23	653 / 653	100%	23.00	603 / 605
breast	100%	675.15	459 / 459	97%	16.48	1083 / 1118
lung	100%	1440.54	578 / 578	97%	19.39	1116 / 1155
kidney	99%	576.18	88 / 89	95%	29.91	857 / 901
prostate	99%	691.62	243 / 245	92%	10.35	464 / 502
stomach	98%	384.80	351 / 359	94%	19.24	268 / 286
intestine	99%	705.78	952 / 966	93%	14.30	488 / 527
uterus	100%	698.05	170 / 170	90%	15.33	414 / 459
esophagus	98%	402.62	1415 / 1445	91%	13.24	167 / 183
bladder	100%	618.71	21 / 21	83%	13.34	420 / 504
adrenal gland	100%	626.60	257 / 258	83%	12.00	192 / 230
ovary	76%	222.13	137 / 180	89%	13.40	382 / 430
pancreas	64%	163.10	209 / 328	97%	21.11	173 / 178
skin	65%	175.75	1179 / 1809	89%	19.56	422 / 472
brain	51%	190.68	1343 / 2642	98%	28.91	692 / 705
liver	62%	194.12	139 / 226	81%	9.72	330 / 406
lymph node	0%	0	0 / 0	100%	83.83	29 / 29
spleen	100%	5449.97	241 / 241	0%	0	0 / 0
adipose	100%	765.65	1202 / 1204	0%	0	0 / 0
peripheral blood	100%	3405.98	927 / 929	0%	0	0 / 0
heart	98%	462.43	845 / 861	0%	0	0 / 0
tonsil	0%	0	0 / 0	96%	29.21	43 / 45
blood vessel	75%	307.64	1003 / 1335	0%	0	0 / 0
eye	0%	0	0 / 0	50%	6.85	40 / 80
muscle	34%	64.21	271 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1