Published data collections

A cell atlas of human thymic development defines T cell repertoire formation

https://doi.org/10.1126/science.aay3224Deposited data# 255,901 cells

A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates

https://doi.org/10.1016/j.cell.2022.11.005Deposited data# 142,247 cells

A molecular single-cell lung atlas of lethal COVID-19

https://doi.org/10.1038/s41586-021-03569-1Deposited data# 116,313 cells

A single-cell atlas of human and mouse white adipose tissue

https://doi.org/10.1038/s41586-022-04518-2Deposited data# 166,149 cells

A spatially resolved atlas of the human lung characterizes a gland-associated immune niche

https://doi.org/10.1038/s41588-022-01243-4Deposited data# 193,108 cells

A spatially resolved single cell genomic atlas of the adult human breast

https://doi.org/10.1038/s41586-023-06252-9Deposited data# 831,677 cells

Abdominal White Adipose Tissue

https://cellxgene.cziscience.com/collections/6b701826-37bb-4356-9792-ff41fc4c3161Deposited data# 72,335 cells

An atlas of healthy and injured cell states and niches in the human kidney

https://doi.org/10.1038/s41586-023-05769-3Deposited data# 304,652 cells

Blood and immune development in human fetal bone marrow and Down syndrome

https://doi.org/10.1038/s41586-021-03929-xDeposited data# 156,947 cells

Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution

https://doi.org/10.1016/j.cell.2020.08.013Deposited data# 98,348 cells

Cell atlas of the human ocular anterior segment: Tissue-specific and shared cell types

https://doi.org/10.1073/pnas.2200914119Deposited data# 195,248 cells

Cross-tissue immune cell analysis reveals tissue-specific features in humans

https://doi.org/10.1126/science.abl5197Deposited data# 329,762 cells

Distinct microbial and immune niches of the human colon

https://doi.org/10.1038/s41590-020-0602-zDeposited data# 41,650 cells

Dysregulated lung stroma drives emphysema exacerbation by potentiating resident lymphocytes to suppress an epithelial stem cell reservoir

https://doi.org/10.1016/j.immuni.2023.01.032Deposited data# 57,747 cells

Generation of complex human induced pluripotent stem cell-derived bone marrow organoids

https://doi.org/10.1038/s41592-024-02172-2Deposited data# 31,040 cells

HCA kidney seed network: University of Michigan

https://explore.data.humancellatlas.org/projects/29ed827b-c539-4f4c-bb6b-ce8f9173dfb7Deposited data# 48,783 cells

Impaired local intrinsic immunity to SARS-CoV-2 infection in severe COVID-19

https://doi.org/10.1016/j.cell.2021.07.023Deposited data# 32,588 cells

Local and systemic responses to SARS-CoV-2 infection in children and adults

https://doi.org/10.1038/s41586-021-04345-xDeposited data# 659,197 cells

Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19

https://doi.org/10.1016/j.immuni.2021.03.005Deposited data# 126,564 cells

Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer

https://doi.org/10.1016/j.ccell.2022.11.001Deposited data# 270,855 cells

Multi-scale spatial mapping of cell populations across anatomical sites in healthy human skin and basal cell carcinoma

https://doi.org/10.1073%2Fpnas.2313326120Deposited data# 152,189 cells

Single-Cell Sequencing of Developing Human Gut Reveals Transcriptional Links to Childhood Crohn’s Disease

https://doi.org/10.1016/j.devcel.2020.11.010Deposited data# 85,351 cells

Single-cell multiomic profiling of human lungs reveals cell-type-specific and age-dynamic control of SARS-CoV2 host genes

https://doi.org/10.7554/eLife.62522Deposited data# 46,500 cells

Single-cell sequencing links multiregional immune landscapes and tissue-resident T cells in ccRCC to tumor topology and therapy efficacy

https://doi.org/10.1016/j.ccell.2021.03.007Deposited data# 167,283 cells

Single-cell transcriptomics of the human retinal pigment epithelium and choroid in health and macular degeneration

https://doi.org/10.1073/pnas.1914143116Deposited data# 4,335 cells

Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function

https://doi.org/10.1126/science.abl4290Deposited data# 209,126 cells

Spatial multi-omic map of human myocardial infarction

https://doi.org/10.1038/s41586-022-05060-xDeposited data# 191,795 cells

Spatially resolved multiomics of human cardiac niches

https://doi.org/10.1038/s41586-023-06311-1Deposited data# 704,296 cells

scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation

https://doi.org/10.1186/s13059-019-1906-xDeposited data# 239,222 cells