HCA kidney seed network: University of Michigan
Matthias Kretzler, Edgar Otto, Christopher O’ Connor, Markus Bitzer, Rajasree Menon
Abstract
The datasets contain single cell RNA sequencing data from the normal region of tumor-nephrectomy samples.
Datasets
1. Single cell RNA-seq data from normal adult kidney tissue
Metadata
donor_id
self_reported_ethnicity_ontology_term_id
donor_BMI
organism_ontology_term_id
sample_uuid
sample_preservation_method
tissue_ontology_term_id
development_stage_ontology_term_id
suspension_uuid
suspension_type
library_uuid
assay_ontology_term_id
mapped_reference_annotation
cell_type_ontology_term_id
author_cell_type
cell_state
disease_ontology_term_id
reported_diseases
sex_ontology_term_id
tissue_type
cell_type
assay
disease
organism
sex
tissue
self_reported_ethnicity
development_stage
PRECISE-9437765861 cells
21_0195035 cells
PRECISE_023_N4992 cells
HCA_54_ref4715 cells
20-668_N3410 cells
20-649_N2979 cells
HCA_51_ref2902 cells
PRECISE-9454202437 cells
21_0152075 cells
56-ref1919 cells
HCA_55_ref1786 cells
21_0161760 cells
57-ref1625 cells
PRECISE165536-000-003N1611 cells
HCA_29_ref1603 cells
20-687_N1528 cells
21_0201293 cells
20-688_N1252 cells
HANCESTRO:000545373 cells
HANCESTRO:05683410 cells
25.839721745861 cells
37.084699885035 cells
32.990856824992 cells
33.021105114715 cells
36.877675053410 cells
34.10156252979 cells
32.553708392902 cells
28.799134662437 cells
21.075295772075 cells
27.561213111919 cells
44.077134991786 cells
23.194226421760 cells
31.829519011625 cells
29.386793471611 cells
56.99218751603 cells
23.890714451528 cells
33.224764391293 cells
35.022754181252 cells
NCBITaxon:960648783 cells
eb76a28c-d0cd-4827-b142-59fac172b1fa5861 cells
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0b511ee4-d2d3-4be4-9903-32e6185c1b151611 cells
3e2642ec-78ba-45b7-af5a-4fe54069c9101603 cells
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22f4d7ab-0ed5-4d7f-8a1f-6bc6ec3345b61293 cells
826d0c76-20b0-47df-94c2-d4506445591b1252 cells
cryopreservation48783 cells
UBERON:000122548783 cells
HsapDv:00001658840 cells
HsapDv:00001617894 cells
HsapDv:00001475035 cells
HsapDv:00001684715 cells
HsapDv:00001543410 cells
HsapDv:00001623038 cells
HsapDv:00001662821 cells
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364d1c5a-09a5-46b8-a6dc-e5b2ca5011d91252 cells
EFO:000992248783 cells
GENCODE 3240485 cells
GENCODE 288298 cells
CL:100110611161 cells
CL:00023068319 cells
CL:10014315117 cells
CL:00001155006 cells
CL:10014324261 cells
CL:10011112757 cells
CL:10013181912 cells
CL:10008491616 cells
CL:00000841612 cells
CL:10007681564 cells
CL:00009901076 cells
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CL:0000576850 cells
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CL:0000814301 cells
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CL:0000875116 cells
CL:0000738109 cells
CL:100069238 cells
CL:000078630 cells
CL:000006620 cells
CL:000078418 cells
CL:000009717 cells
CL:000018611 cells
PC5117 cells
C-TAL5041 cells
PT-S1/S23628 cells
M-TAL3592 cells
aPT2933 cells
aTAL2528 cells
EC-PTC2463 cells
DTL12358 cells
IC-A2093 cells
dPT1681 cells
DCT1616 cells
T1557 cells
CNT1462 cells
CNT-IC-A1449 cells
VSMC/P1295 cells
cDC1076 cells
EC-DVR1032 cells
EC-GC973 cells
ATL901 cells
MON850 cells
IC-B583 cells
VSMC556 cells
NK458 cells
EC-AEA400 cells
DTL2399 cells
T-CYT385 cells
B327 cells
NKT301 cells
POD275 cells
MAC-M2264 cells
PEC262 cells
tPC-IC136 cells
EC-LYM121 cells
ncMON116 cells
CNT-PC102 cells
PT-S377 cells
MDC76 cells
MC61 cells
cycT55 cells
cycMNP33 cells
PL30 cells
aFIB21 cells
cycEPI20 cells
pDC18 cells
FIB17 cells
MAST17 cells
EC-AVR17 cells
MYOF11 cells
na48675 cells
proliferating108 cells
PATO:000046148783 cells
[kidney cancer]48783 cells
PATO:000038434048 cells
PATO:000038314735 cells
tissue48783 cells
kidney loop of Henle thick ascending limb epithelial cell11161 cells
epithelial cell of proximal tubule8319 cells
kidney collecting duct principal cell5117 cells
endothelial cell5006 cells
kidney collecting duct intercalated cell4261 cells
kidney loop of Henle thin descending limb epithelial cell2757 cells
renal interstitial pericyte1912 cells
kidney distal convoluted tubule epithelial cell1616 cells
T cell1612 cells
kidney connecting tubule epithelial cell1564 cells
conventional dendritic cell1076 cells
kidney loop of Henle thin ascending limb epithelial cell901 cells
monocyte850 cells
natural killer cell458 cells
cytotoxic T cell385 cells
B cell327 cells
mature NK T cell301 cells
podocyte275 cells
alternatively activated macrophage264 cells
parietal epithelial cell262 cells
non-classical monocyte116 cells
leukocyte109 cells
kidney interstitial fibroblast38 cells
plasma cell30 cells
epithelial cell20 cells
plasmacytoid dendritic cell18 cells
mast cell17 cells
myofibroblast cell11 cells
10x 3' v348783 cells
normal48783 cells
Homo sapiens48783 cells
male34048 cells
female14735 cells
cortex of kidney48783 cells
European45373 cells
African American3410 cells
71-year-old human stage8840 cells
67-year-old human stage7894 cells
53-year-old human stage5035 cells
74-year-old human stage4715 cells
60-year-old human stage3410 cells
68-year-old human stage3038 cells
72-year-old human stage2821 cells
43-year-old human stage2437 cells
57-year-old human stage2075 cells
59-year-old human stage1919 cells
58-year-old human stage1760 cells
69-year-old human stage1625 cells
46-year-old human stage1611 cells
50-year-old human stage1603 cells
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Source data
https://cellxgene.cziscience.com/collections/a98b828a-622a-483a-80e0-15703678befd
Alias names
Cite this study
https://explore.data.humancellatlas.org/projects/29ed827b-c539-4f4c-bb6b-ce8f9173dfb7 https://explore.data.humancellatlas.org/projects/29ed827b-c539-4f4c-bb6b-ce8f9173dfb7