Published data collections

A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates

https://doi.org/10.1016/j.cell.2022.11.005Deposited data# 142,247 cells

A molecular cell atlas of the human lung from single cell RNA sequencing

https://doi.org/10.1038/s41586-020-2922-4Deposited data# 75,071 cells

A single-cell comparison of adult and fetal human epicardium defines the age-associated changes in epicardial activity

https://doi.org/10.1038/s44161-022-00183-wDeposited data# 60,668 cells

An integrated cell atlas of the lung in health and disease

https://doi.org/10.1038/s41591-023-02327-2Deposited data# 584,944 cells

Blood and immune development in human fetal bone marrow and Down syndrome

https://doi.org/10.1038/s41586-021-03929-xDeposited data# 156,947 cells

Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution

https://doi.org/10.1016/j.cell.2020.08.013Deposited data# 98,348 cells

Cells of the human intestinal tract mapped across space and time

https://doi.org/10.1038/s41586-021-03852-1Deposited data# 428,469 cells

Charting human development using a multi-endodermal organ atlas and organoid models

https://doi.org/10.1016/j.cell.2021.04.028Deposited data# 155,232 cells

Construction of a human cell landscape at single-cell level

https://doi.org/10.1038/s41586-020-2157-4Deposited data# 599,926 cells

Cross-tissue immune cell analysis reveals tissue-specific features in humans

https://doi.org/10.1126/science.abl5197Deposited data# 329,762 cells

Follicular Lymphoma Microenvironment Characteristics Associated with Tumor Cell Mutations and MHC Class II Expression

https://doi.org/10.1158/2643-3230.BCD-21-0075Deposited data# 137,147 cells

HCA kidney seed network: University of Michigan

https://explore.data.humancellatlas.org/projects/29ed827b-c539-4f4c-bb6b-ce8f9173dfb7Deposited data# 48,783 cells

Identification of distinct tumor cell populations and key genetic mechanisms through single cell sequencing in hepatoblastoma

https://doi.org/10.1038/s42003-021-02562-8Deposited data# 67,110 cells

Immunophenotyping of COVID-19 and influenza highlights the role of type I interferons in development of severe COVID-19

https://doi.org/10.1126/sciimmunol.abd1554Deposited data# 59,572 cells

Integrated analysis of multimodal single-cell data

https://doi.org/10.1016/j.cell.2021.04.048Deposited data# 161,764 cells

Integrated analysis of multimodal single-cell data (version 2)

https://doi.org/10.1016/j.cell.2021.04.048Deposited data# 584,884 cells

Integrated scRNA-Seq Identifies Human Postnatal Thymus Seeding Progenitors and Regulatory Dynamics of Differentiating Immature Thymocytes

https://doi.org/10.1016/j.immuni.2020.03.019Deposited data# 71,732 cells

Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis

https://doi.org/10.1016/j.cell.2019.06.029Deposited data# 34,772 cells

Local and systemic responses to SARS-CoV-2 infection in children and adults

https://doi.org/10.1038/s41586-021-04345-xDeposited data# 659,197 cells

Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19

https://doi.org/10.1016/j.immuni.2021.03.005Deposited data# 126,564 cells

Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer

https://doi.org/10.1016/j.ccell.2022.11.001Deposited data# 270,855 cells

Signatures of plasticity, metastasis, and immunosuppression in an atlas of human small cell lung cancer

https://doi.org/10.1016/j.ccell.2021.09.008Deposited data# 147,137 cells

Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations

https://doi.org/10.1038/s41467-018-06318-7Deposited data# 8,444 cells

Single cell derived mRNA signals across human kidney tumors

https://doi.org/10.1038/s41467-021-23949-5Deposited data# 31,839 cells

Single cell profiling of COVID-19 patients: an international data resource from multiple tissues

https://doi.org/10.1101/2020.11.20.20227355Deposited data# 97,499 cells

Single-Cell Sequencing of Developing Human Gut Reveals Transcriptional Links to Childhood Crohn’s Disease

https://doi.org/10.1016/j.devcel.2020.11.010Deposited data# 85,351 cells

Single-cell analyses of renal cell cancers reveal insights into tumor microenvironment, cell of origin, and therapy response

https://doi.org/10.1073/pnas.2103240118Deposited data# 29,129 cells

Single-cell multi-omics analysis of the immune response in COVID-19

https://doi.org/10.1038/s41591-021-01329-2Deposited data# 647,366 cells

Single-cell multiomics reveals increased plasticity, resistant populations, and stem-cell–like blasts in KMT2A-rearranged leukemia

https://doi.org/10.1182/blood.2021013442Deposited data# 128,588 cells

Single-cell sequencing links multiregional immune landscapes and tissue-resident T cells in ccRCC to tumor topology and therapy efficacy

https://doi.org/10.1016/j.ccell.2021.03.007Deposited data# 167,283 cells

Spatiotemporal immune zonation of the human kidney

https://doi.org/10.1126/science.aat5031Deposited data# 67,465 cells

The landscape of immune dysregulation in Crohn’s disease revealed through single-cell transcriptomic profiling in the ileum and colon

https://doi.org/10.1016/j.immuni.2023.01.002Deposited data# 720,633 cells

Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19

https://doi.org/10.1126/scitranslmed.abh2624Deposited data# 600,929 cells

mRNA COVID-19 vaccine elicits potent adaptive immune response without the acute inflammation of SARS-CoV-2 infection

https://doi.org/10.1016/j.isci.2023.108572Deposited data# 195,632 cells

scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation

https://doi.org/10.1186/s13059-019-1906-xDeposited data# 239,222 cells