Studies | OmnibusX

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cell type (236)

condition (31)

development stage (6)

technology (12)

tissue (35)

B cell

CD16-negative, CD56-bright natural killer cell, human

CD16-positive, CD56-dim natural killer cell, human

CD4-positive helper T cell

CD4-positive, alpha-beta T cell

CD4-positive, alpha-beta cytotoxic T cell

CD4-positive, alpha-beta memory T cell

CD8-positive, alpha-beta T cell

CD8-positive, alpha-beta memory T cell

GABAergic amacrine cell

GABAergic interneuron

GABAergic neuron

H1 horizontal cell

H2 horizontal cell

Hofbauer cell

IgA plasma cell

IgG plasma cell

IgM plasma cell

Kupffer cell

Langerhans cell

M cell of gut

Merkel cell

Mueller cell

OFF-bipolar cell

ON-bipolar cell

Purkinje cell

Schwann cell

T cell

T follicular helper cell

T-helper 1 cell

T-helper 17 cell

T-helper 2 cell

abnormal cell

acinar cell

adipocyte

adventitial cell

airway submucosal gland

alveolar macrophage

amacrine cell

astrocyte

basal cell

basophil

brush cell

capillary endothelial cell

cardiac muscle cell

central memory CD4-positive, alpha-beta T cell

central memory CD8-positive, alpha-beta T cell

chandelier cell

cholangiocyte

chondrocyte

ciliated cell

classical monocyte

club cell

colon epithelial cell

common lymphoid progenitor

common myeloid progenitor

cone retinal bipolar cell

connective tissue cell

conventional dendritic cell

cortical interneuron

dendritic cell

deuterosomal cell

differentiation-committed oligodendrocyte precursor

dopaminergic neuron

double negative thymocyte

double-positive, alpha-beta thymocyte

duct epithelial cell

early lymphoid progenitor

effector CD4-positive, alpha-beta T cell

effector CD8-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell

effector memory CD4-positive, alpha-beta T cell, terminally differentiated

effector memory CD8-positive, alpha-beta T cell

effector memory CD8-positive, alpha-beta T cell, terminally differentiated

endocardial cell

endocrine cell

endothelial cell

endothelial cell of artery

endothelial cell of lymphatic vessel

endothelial cell of sinusoid

endothelial cell of vascular tree

endothelial stalk cell

enteric neuron

enterochromaffin-like cell

enterocyte

enteroendocrine cell

eosinophil

ependymal cell

epithelial cell

epithelial cell of proximal tubule

epithelial cell of thymus

erythroblast

erythrocyte

erythroid lineage cell

exhausted T cell

extravillous trophoblast

fibroblast

follicular B cell

follicular dendritic cell

foveolar cell of stomach

gamma-delta T cell

germinal center B cell

glandular epithelial cell

glial cell

glomerular endothelial cell

glutamatergic neuron

glycinergic amacrine cell

goblet cell

granule cell

granulocyte

granulocyte monocyte progenitor cell

granulosa cell

group 2 innate lymphoid cell

group 3 innate lymphoid cell

hematopoietic precursor cell

hematopoietic stem cell

hepatic stellate cell

hepatocyte

hillock cell

immature B cell

inflammatory macrophage

inhibitory interneuron

innate lymphoid cell

intermediate monocyte

interneuron

interstitial cell of Cajal

intestinal crypt stem cell

intraepithelial lymphocyte

ionocyte

keratinocyte

kidney connecting tubule epithelial cell

kidney distal convoluted tubule epithelial cell

kidney failure

kidney loop of Henle epithelial cell

leukocyte

luminal adaptive secretory precursor cell of mammary gland

luminal cell of prostate epithelium

luminal hormone-sensing cell of mammary gland

lymphangioblast

lymphocyte

macroglial cell

macrophage

mast cell

mature NK T cell

medium spiny neuron

megakaryocyte

megakaryocyte-erythroid progenitor cell

melanocyte

memory B cell

mesangial cell

mesothelial cell

microglial cell

monocyte

monocyte-derived dendritic cell

mononuclear phagocyte

motor neuron

mucosal invariant T cell

mucus secreting cell

mural cell

muscle cell

myeloid cell

myoepithelial cell

myofibroblast cell

naive B cell

naive thymus-derived CD4-positive, alpha-beta T cell

naive thymus-derived CD8-positive, alpha-beta T cell

natural killer cell

neural crest cell

neural progenitor cell

neuroblast (sensu Vertebrata)

neuroendocrine cell

neuron

neutrophil

non-classical monocyte

oligodendrocyte

oligodendrocyte precursor cell

osteoclast

pancreatic A cell

pancreatic D cell

pancreatic PP cell

pancreatic ductal cell

pancreatic epsilon cell

pancreatic stellate cell

paneth cell

papillary tips cell

parietal epithelial cell

peptic cell

pericyte

placental villous trophoblast

plasma cell

plasmablast

plasmacytoid dendritic cell

platelet

pneumocyte

podocyte

pre-conventional dendritic cell

preadipocyte

precursor B cell

precursor cell

pro-B cell

pro-T cell

progenitor cell

progenitor cell of mammary luminal epithelium

pyramidal neuron

radial glial cell

regulatory T cell

renal alpha-intercalated cell

renal beta-intercalated cell

renal intercalated cell

renal principal cell

respiratory goblet cell

respiratory suprabasal cell

retina horizontal cell

retinal bipolar neuron

retinal cone cell

retinal ganglion cell

retinal pigment epithelial cell

retinal rod cell

rod bipolar cell

secretory cell

serous secreting cell

smooth muscle cell

squamous epithelial cell

stratified epithelial cell

syncytiotrophoblast

syncytiotrophoblast cell

thymocyte

tip cell

tissue-resident macrophage

transit amplifying cell

type B pancreatic cell

type I pneumocyte

type II pneumocyte

unipolar brush cell

urothelial cell

vein endothelial cell

34 studies

72 datasets

7,832,432 cells

	Title	Total cells
1	A blood atlas of COVID-19 defines hallmarks of disease severity and specificity https://doi.org/10.1016/j.cell.2022.01.012Deposited data# 836,148 cells Dataset 1: COMBAT project: single cell gene expression data from COVID-19, sepsis and flu patient PBMCs cell type: B.INT expressed genes: EEF1G		Explore
2	A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates https://doi.org/10.1016/j.cell.2022.11.005Deposited data# 142,247 cells Dataset 1: All cells cell type: B-1a B cell B-1b B cell expressed genes: EEF1G		Explore
3	A molecular atlas of the human postmenopausal fallopian tube and ovary from single-cell RNA and ATAC sequencing https://doi.org/10.1016/j.celrep.2022.111838Deposited data# 86,708 cells Dataset 1: Fallopian tube RNA cell type: B/P expressed genes: EEF1G		Explore
4	A molecular cell atlas of the human lung from single cell RNA sequencing https://doi.org/10.1038/s41586-020-2922-4Deposited data# 75,071 cells Dataset 1: Krasnow Lab Human Lung Cell Atlas, 10X cell type: B expressed genes: EEF1G		Explore
5	A molecular single-cell lung atlas of lethal COVID-19 https://doi.org/10.1038/s41586-021-03569-1Deposited data# 116,313 cells Dataset 1: A molecular single-cell lung atlas of lethal COVID-19 cell type: Activated B cells B cells expressed genes: EEF1G		Explore
6	A single-cell comparison of adult and fetal human epicardium defines the age-associated changes in epicardial activity https://doi.org/10.1038/s44161-022-00183-wDeposited data# 60,668 cells Dataset 1: Integrated adult and foetal hearts cell type: B_cells expressed genes: EEF1G		Explore
7	An integrated cell atlas of the lung in health and disease https://doi.org/10.1038/s41591-023-02327-2Deposited data# 584,944 cells Dataset 1: An integrated cell atlas of the human lung in health and disease (core) cell type: B cells expressed genes: EEF1G		Explore
8	Blood and immune development in human fetal bone marrow and Down syndrome https://doi.org/10.1038/s41586-021-03929-xDeposited data# 156,947 cells Dataset 3: Fetal Bone Marrow (10x) - Down Syndrome cell type: early B cell mature B cell expressed genes: EEF1G		Explore
9	Cells of the human intestinal tract mapped across space and time https://doi.org/10.1038/s41586-021-03852-1Deposited data# 428,469 cells Dataset 1: Total - Cells of the human intestinal tract mapped across space and time cell type: B cell expressed genes: EEF1G		Explore
10	Cellular heterogeneity of human fallopian tubes in normal and hydrosalpinx disease states identified using scRNA-seq https://doi.org/10.1016/j.devcel.2022.02.017Deposited data# 77,536 cells Dataset 1: scRNA-seq analysis of human fallopian tubes in healthy Vs. hydrosalphinx states cell type: B cell expressed genes: EEF1G		Explore
11	Charting human development using a multi-endodermal organ atlas and organoid models https://doi.org/10.1016/j.cell.2021.04.028Deposited data# 155,232 cells Dataset 1: Developing Human Atlas cell type: B cell expressed genes: EEF1G		Explore
12	Cross-tissue immune cell analysis reveals tissue-specific features in humans https://doi.org/10.1126/science.abl5197Deposited data# 329,762 cells Dataset 1: Global cell type: ABCs expressed genes: EEF1G		Explore
13	Distinct microbial and immune niches of the human colon https://doi.org/10.1038/s41590-020-0602-zDeposited data# 41,650 cells Dataset 1: Colon cell type: B cell cycling expressed genes: EEF1G		Explore
14	Follicular Lymphoma Microenvironment Characteristics Associated with Tumor Cell Mutations and MHC Class II Expression https://doi.org/10.1158/2643-3230.BCD-21-0075Deposited data# 137,147 cells Dataset 1: Single cell RNA sequencing of follicular lymphoma cell type: NormalB expressed genes: EEF1G		Explore
15	HCA kidney seed network: University of Michigan https://explore.data.humancellatlas.org/projects/29ed827b-c539-4f4c-bb6b-ce8f9173dfb7Deposited data# 48,783 cells Dataset 1: Single cell RNA-seq data from normal adult kidney tissue cell type: B expressed genes: EEF1G		Explore
16	Integrated analysis of multimodal single-cell data (version 2) https://doi.org/10.1016/j.cell.2021.04.048Deposited data# 584,884 cells Dataset 1: Human - Lung v2 (HLCA) cell type: B cells expressed genes: EEF1G		Explore
17	Local and systemic responses to SARS-CoV-2 infection in children and adults https://doi.org/10.1038/s41586-021-04345-xDeposited data# 659,197 cells Dataset 1: PBMC cell type: B invar expressed genes: EEF1G Dataset 2: Airway cell type: B cycling expressed genes: EEF1G		Explore
18	Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19 https://doi.org/10.1016/j.immuni.2021.03.005Deposited data# 126,564 cells Dataset 1: 49 years old male - Fresh PBMCs (2 days post-intubation) cell type: Bcell expressed genes: EEF1G Dataset 2: 49 years old male - Airway Wash (2 days post-intubation) cell type: Bcell expressed genes: EEF1G Dataset 3: 49 years old male - Fresh PBMCs (3 days post-intubation) cell type: Bcell expressed genes: EEF1G Dataset 4: 66 years old female - Fresh PBMCs (2 days post-intubation) cell type: Bcell expressed genes: EEF1G Dataset 7: 66 years old female - Fresh PBMCs (4 days post-intubation) cell type: Bcell expressed genes: EEF1G Dataset 8: 74 years old female - Fresh PBMCs (3 days post-intubation) cell type: Bcell expressed genes: EEF1G Dataset 9: 74 years old female - Fresh PBMCs (4 days post-intubation) cell type: Bcell expressed genes: EEF1G Dataset 10: 74 years old female - Fresh PBMCs (7 days post-intubation) cell type: Bcell expressed genes: EEF1G Dataset 11: 66 years old female - Fresh PBMCs (3 days post-intubation) cell type: Bcell expressed genes: EEF1G Dataset 12: 74 years old female - Fresh PBMCs (8 days post-intubation) cell type: Bcell expressed genes: EEF1G Dataset 13: 74 years old female - Airway Wash (1 day post-intubation) cell type: Bcell expressed genes: EEF1G Dataset 14: 49 years old male - Fresh PBMCs (1 day post-intubation) cell type: Bcell expressed genes: EEF1G Dataset 15: 66 years old female - Airway Wash (7 days post-intubation) cell type: Bcell expressed genes: EEF1G Dataset 16: 82 years old female - Fresh PBMCs (1 day post-intubation) cell type: Bcell expressed genes: EEF1G Dataset 18: 66 years old female - Fresh PBMCs (7 days post-intubation) cell type: Bcell expressed genes: EEF1G Dataset 20: 74 years old female - Airway Wash (6 days post-intubation) cell type: Bcell expressed genes: EEF1G Dataset 21: 66 years old female - Airway Wash (4 days post-intubation) cell type: Bcell expressed genes: EEF1G Dataset 27: 74 years old female - Airway Wash (7 days post-intubation) cell type: Bcell expressed genes: EEF1G		Explore
19	Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer https://doi.org/10.1016/j.ccell.2022.11.001Deposited data# 270,855 cells Dataset 1: Single-cell transcriptomic datasets of Renal cell carcinoma patients cell type: B cell expressed genes: EEF1G		Explore
20	Polybacterial intracellular coinfection of epithelial stem cells in periodontitis https://doi.org/10.1101/2023.08.23.554343Deposited data# 105,918 cells Dataset 1: An Integrated Single Cell Meta-atlas of Human Periodontitis cell type: B.Cells expressed genes: EEF1G		Explore
21	Single cell RNA sequencing of human microglia uncovers a subset associated with Alzheimer’s disease https://doi.org/10.1038/s41467-020-19737-2Deposited data# 16,245 cells Dataset 1: Olah et al (2020) Single-cell Human Microglia cell type: B cell expressed genes: EEF1G		Explore
22	Single cell analysis of mouse and human prostate reveals novel fibroblasts with specialized distribution and microenvironment interactions https://doi.org/10.1002/path.5751Deposited data# 83,451 cells Dataset 1: All Human Cells cell type: B cell expressed genes: EEF1G		Explore
23	Single cell derived mRNA signals across human kidney tumors https://doi.org/10.1038/s41467-021-23949-5Deposited data# 31,839 cells Dataset 1: fetal cell type: B cell Proliferating B cell expressed genes: EEF1G		Explore
24	Single cell profiling of COVID-19 patients: an international data resource from multiple tissues https://doi.org/10.1101/2020.11.20.20227355Deposited data# 97,499 cells Dataset 1: Autoimmunity PBMCs cell type: Exhausted B expressed genes: EEF1G		Explore
25	Single cell transcriptomic profiling identifies molecular phenotypes of newborn human lung cells https://doi.org/10.3390/genes15030298Deposited data# 5,499 cells Dataset 1: Single cell transcriptomic profiling identifies molecular phenotypes of newborn human lung cells cell type: B_Cell expressed genes: EEF1G		Explore
26	Single-Cell Sequencing of Developing Human Gut Reveals Transcriptional Links to Childhood Crohn’s Disease https://doi.org/10.1016/j.devcel.2020.11.010Deposited data# 85,351 cells Dataset 2: Paediatric Human Gut (4-14y) cell type: Activated B cell B cell Cycling B cell expressed genes: EEF1G		Explore
27	Single-cell multi-omics analysis of the immune response in COVID-19 https://doi.org/10.1038/s41591-021-01329-2Deposited data# 647,366 cells Dataset 1: Single-cell multi-omics analysis of the immune response in COVID-19 cell type: B_exhausted expressed genes: EEF1G		Explore
28	Single-cell reconstruction of follicular remodeling in the human adult ovary https://doi.org/10.1038/s41467-019-11036-9Deposited data# 20,676 cells Dataset 1: Single-cell reconstruction of follicular remodeling in the human adult ovary cell type: Imuune-B expressed genes: EEF1G		Explore
29	Single-cell sequencing links multiregional immune landscapes and tissue-resident T cells in ccRCC to tumor topology and therapy efficacy https://doi.org/10.1016/j.ccell.2021.03.007Deposited data# 167,283 cells Dataset 1: Single-cell sequencing links multiregional immune landscapes and tissue-resident T cells in ccRCC to tumor topology and therapy efficacy cell type: B cell expressed genes: EEF1G		Explore
30	Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors https://doi.org/10.1126/science.aat1699Deposited data# 40,268 cells Dataset 1: mature cell type: B cell expressed genes: EEF1G		Explore
31	Spatially resolved multiomics of human cardiac niches https://doi.org/10.1038/s41586-023-06311-1Deposited data# 704,296 cells Dataset 1: Combined single cell and single nuclei RNA-Seq data - Heart Global cell type: B expressed genes: EEF1G		Explore
32	Spatiotemporal immune zonation of the human kidney https://doi.org/10.1126/science.aat5031Deposited data# 67,465 cells Dataset 1: Mature kidney dataset: full cell type: B cell expressed genes: EEF1G Dataset 2: Fetal kidney dataset: full cell type: B cell Proliferating B cell expressed genes: EEF1G		Explore
33	Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19 https://doi.org/10.1126/scitranslmed.abh2624Deposited data# 600,929 cells Dataset 1: Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19 cell type: B_Preplasm_1002 B_Preplasma_Early B_Preplasma_Late expressed genes: EEF1G		Explore
34	scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation https://doi.org/10.1186/s13059-019-1906-xDeposited data# 239,222 cells Dataset 3: Lung Parenchyma cell type: B_cells expressed genes: EEF1G		Explore

Published data collections