Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 9 studies | 21% ± 5% | |
oligodendrocyte | 6 studies | 23% ± 6% | |
fibroblast | 5 studies | 17% ± 2% | |
epithelial cell | 4 studies | 28% ± 4% | |
GABAergic neuron | 4 studies | 34% ± 13% | |
glutamatergic neuron | 4 studies | 48% ± 16% | |
oligodendrocyte precursor cell | 4 studies | 24% ± 8% | |
endothelial cell of lymphatic vessel | 4 studies | 17% ± 2% | |
B cell | 3 studies | 18% ± 0% | |
microglial cell | 3 studies | 19% ± 4% | |
lymphocyte | 3 studies | 18% ± 1% | |
interneuron | 3 studies | 36% ± 17% | |
astrocyte | 3 studies | 32% ± 4% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 42% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1506.84 | 1445 / 1445 | 100% | 12.97 | 183 / 183 |
brain | 100% | 1393.88 | 2641 / 2642 | 100% | 17.73 | 705 / 705 |
breast | 100% | 1697.34 | 459 / 459 | 100% | 19.59 | 1117 / 1118 |
prostate | 100% | 1512.75 | 245 / 245 | 100% | 11.85 | 500 / 502 |
lung | 100% | 1171.69 | 576 / 578 | 100% | 15.03 | 1154 / 1155 |
intestine | 100% | 1407.22 | 965 / 966 | 100% | 12.47 | 525 / 527 |
bladder | 100% | 1880.52 | 21 / 21 | 99% | 15.99 | 501 / 504 |
uterus | 100% | 1843.34 | 170 / 170 | 99% | 15.48 | 455 / 459 |
thymus | 100% | 1492.77 | 653 / 653 | 99% | 13.07 | 599 / 605 |
stomach | 100% | 939.05 | 359 / 359 | 99% | 11.93 | 283 / 286 |
ovary | 100% | 1603.23 | 180 / 180 | 99% | 10.66 | 425 / 430 |
pancreas | 99% | 678.62 | 326 / 328 | 98% | 11.88 | 175 / 178 |
skin | 100% | 2177.04 | 1809 / 1809 | 97% | 17.38 | 456 / 472 |
kidney | 100% | 967.33 | 89 / 89 | 94% | 9.71 | 850 / 901 |
adrenal gland | 100% | 1024.43 | 258 / 258 | 86% | 5.28 | 198 / 230 |
liver | 100% | 570.18 | 226 / 226 | 70% | 4.42 | 285 / 406 |
adipose | 100% | 1637.80 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1736.64 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 14.84 | 29 / 29 |
spleen | 100% | 1304.31 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 12.45 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 6.68 | 1 / 1 |
muscle | 99% | 799.18 | 797 / 803 | 0% | 0 | 0 / 0 |
heart | 98% | 788.61 | 848 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 85% | 7.48 | 68 / 80 |
peripheral blood | 46% | 735.48 | 428 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000463 | Biological process | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
GO_0051259 | Biological process | protein complex oligomerization |
GO_0000492 | Biological process | box C/D snoRNP assembly |
GO_0048254 | Biological process | snoRNA localization |
GO_0070761 | Cellular component | pre-snoRNP complex |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005634 | Cellular component | nucleus |
GO_0001094 | Molecular function | TFIID-class transcription factor complex binding |
GO_0019899 | Molecular function | enzyme binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0005515 | Molecular function | protein binding |
GO_0046872 | Molecular function | metal ion binding |
GO_0051117 | Molecular function | ATPase binding |
Gene name | ZNHIT6 |
Protein name | Box C/D snoRNA protein 1 (Serologically defined breast cancer antigen NY-BR-75) (Zinc finger HIT domain-containing protein 6) |
Synonyms | BCD1 C1orf181 |
Description | FUNCTION: Required for box C/D snoRNAs accumulation involved in snoRNA processing, snoRNA transport to the nucleolus and ribosome biogenesis. . |
Accessions | ENST00000370574.4 [Q9NWK9-1] Q9NWK9 ENST00000431532.6 [Q9NWK9-2] |