Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 16 studies | 36% ± 17% | |
endothelial cell | 16 studies | 26% ± 8% | |
oligodendrocyte precursor cell | 11 studies | 35% ± 16% | |
macrophage | 10 studies | 37% ± 14% | |
fibroblast | 10 studies | 24% ± 7% | |
adipocyte | 9 studies | 36% ± 12% | |
oligodendrocyte | 9 studies | 28% ± 11% | |
GABAergic neuron | 7 studies | 40% ± 19% | |
microglial cell | 7 studies | 26% ± 7% | |
smooth muscle cell | 6 studies | 20% ± 4% | |
glutamatergic neuron | 5 studies | 46% ± 23% | |
cardiac muscle cell | 5 studies | 35% ± 8% | |
myeloid cell | 5 studies | 32% ± 15% | |
endothelial cell of lymphatic vessel | 5 studies | 24% ± 6% | |
monocyte | 4 studies | 36% ± 9% | |
type I pneumocyte | 4 studies | 21% ± 4% | |
interneuron | 4 studies | 43% ± 18% | |
GABAergic interneuron | 3 studies | 17% ± 2% | |
dendritic cell | 3 studies | 18% ± 1% | |
ependymal cell | 3 studies | 33% ± 18% | |
alveolar macrophage | 3 studies | 48% ± 13% | |
pericyte | 3 studies | 20% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
thymus | 100% | 1278.13 | 653 / 653 | 100% | 15.38 | 605 / 605 |
uterus | 100% | 1404.88 | 170 / 170 | 100% | 8.83 | 458 / 459 |
prostate | 100% | 790.46 | 244 / 245 | 100% | 7.26 | 502 / 502 |
breast | 100% | 1111.69 | 459 / 459 | 99% | 9.08 | 1112 / 1118 |
intestine | 100% | 1148.90 | 966 / 966 | 99% | 6.88 | 523 / 527 |
lung | 100% | 1240.68 | 577 / 578 | 99% | 8.12 | 1144 / 1155 |
ovary | 100% | 781.47 | 180 / 180 | 99% | 6.76 | 424 / 430 |
esophagus | 100% | 961.55 | 1444 / 1445 | 98% | 7.46 | 180 / 183 |
brain | 98% | 476.24 | 2582 / 2642 | 100% | 11.66 | 705 / 705 |
kidney | 99% | 537.13 | 88 / 89 | 99% | 7.68 | 889 / 901 |
bladder | 100% | 1287.67 | 21 / 21 | 97% | 6.46 | 487 / 504 |
skin | 100% | 1034.64 | 1807 / 1809 | 95% | 9.11 | 450 / 472 |
stomach | 95% | 702.53 | 342 / 359 | 99% | 7.74 | 284 / 286 |
adrenal gland | 97% | 478.31 | 251 / 258 | 95% | 5.92 | 219 / 230 |
liver | 88% | 296.60 | 200 / 226 | 92% | 4.99 | 372 / 406 |
pancreas | 62% | 191.25 | 202 / 328 | 98% | 10.09 | 175 / 178 |
adipose | 100% | 1498.35 | 1204 / 1204 | 0% | 0 | 0 / 0 |
spleen | 100% | 1356.94 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 4.40 | 1 / 1 |
blood vessel | 100% | 1469.79 | 1334 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 2070.91 | 802 / 803 | 0% | 0 | 0 / 0 |
heart | 98% | 942.12 | 846 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 8.08 | 44 / 45 |
peripheral blood | 97% | 2444.02 | 900 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 97% | 10.63 | 28 / 29 |
eye | 0% | 0 | 0 / 0 | 93% | 5.41 | 74 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0005634 | Cellular component | nucleus |
GO_0005515 | Molecular function | protein binding |
GO_0000981 | Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO_0043565 | Molecular function | sequence-specific DNA binding |
GO_0046872 | Molecular function | metal ion binding |
Gene name | ZNF438 |
Protein name | Zinc finger protein 438 Alternative protein ZNF438 |
Synonyms | hCG_1783552 |
Description | FUNCTION: Isoform 1 acts as a transcriptional repressor. |
Accessions | ENST00000609683.5 ENST00000442986.5 [Q7Z4V0-1] ENST00000436087.7 [Q7Z4V0-1] L8EAU2 ENST00000361310.7 [Q7Z4V0-1] Q7Z4V0 V9GYJ1 ENST00000413025.5 [Q7Z4V0-1] ENST00000375311.1 ENST00000331737.10 [Q7Z4V0-2] ENST00000452305.5 [Q7Z4V0-2] ENST00000538351.6 [Q7Z4V0-3] Q5T427 |