Name | Number of supported studies | Average coverage | |
---|---|---|---|
GABAergic neuron | 3 studies | 23% ± 2% | |
glutamatergic neuron | 3 studies | 33% ± 5% | |
transit amplifying cell | 3 studies | 40% ± 31% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 24% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 418.57 | 1442 / 1445 | 99% | 4.41 | 182 / 183 |
uterus | 100% | 519.07 | 170 / 170 | 95% | 4.09 | 438 / 459 |
breast | 100% | 480.33 | 459 / 459 | 91% | 2.56 | 1012 / 1118 |
bladder | 100% | 372.57 | 21 / 21 | 88% | 2.63 | 445 / 504 |
brain | 97% | 350.71 | 2552 / 2642 | 91% | 2.63 | 639 / 705 |
stomach | 100% | 379.72 | 358 / 359 | 86% | 2.32 | 245 / 286 |
lung | 100% | 532.08 | 577 / 578 | 85% | 2.29 | 982 / 1155 |
intestine | 100% | 479.96 | 966 / 966 | 84% | 2.14 | 444 / 527 |
skin | 100% | 513.56 | 1802 / 1809 | 79% | 2.41 | 371 / 472 |
pancreas | 98% | 225.84 | 322 / 328 | 77% | 1.44 | 137 / 178 |
adrenal gland | 100% | 318.21 | 257 / 258 | 71% | 1.30 | 164 / 230 |
ovary | 100% | 478.28 | 180 / 180 | 68% | 1.37 | 293 / 430 |
prostate | 100% | 471.88 | 245 / 245 | 63% | 1.05 | 318 / 502 |
thymus | 100% | 452.05 | 652 / 653 | 62% | 1.49 | 378 / 605 |
kidney | 97% | 218.70 | 86 / 89 | 44% | 0.77 | 397 / 901 |
liver | 94% | 197.43 | 213 / 226 | 27% | 0.50 | 111 / 406 |
spleen | 100% | 870.34 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 1.52 | 1 / 1 |
adipose | 100% | 400.85 | 1203 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 98% | 282.50 | 1311 / 1335 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 3.98 | 44 / 45 |
lymph node | 0% | 0 | 0 / 0 | 97% | 4.03 | 28 / 29 |
muscle | 96% | 224.37 | 767 / 803 | 0% | 0 | 0 / 0 |
heart | 89% | 171.14 | 768 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 54% | 592.21 | 503 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 18% | 0.33 | 14 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0032508 | Biological process | DNA duplex unwinding |
GO_0000725 | Biological process | recombinational repair |
GO_0006302 | Biological process | double-strand break repair |
GO_0035861 | Cellular component | site of double-strand break |
GO_0005634 | Cellular component | nucleus |
GO_0016853 | Molecular function | isomerase activity |
GO_0016787 | Molecular function | hydrolase activity |
GO_0005515 | Molecular function | protein binding |
GO_0008270 | Molecular function | zinc ion binding |
GO_0043139 | Molecular function | 5'-3' DNA helicase activity |
GO_0005524 | Molecular function | ATP binding |
Gene name | ZGRF1 |
Protein name | HCG21296, isoform CRA_a (Zinc finger GRF-type containing 1) 5'-3' DNA helicase ZGRF1 (EC 5.6.2.3) (GRF-type zinc finger domain-containing protein 1) Zinc finger GRF-type containing 1 |
Synonyms | hCG_21296 C4orf21 |
Description | FUNCTION: 5'-3' DNA helicase which is recruited to sites of DNA damage and promotes repair of replication-blocking DNA lesions through stimulation of homologous recombination (HR) . Promotes HR by directly stimulating RAD51-mediated strand exchange activity . Not required to load RAD51 at sites of DNA damage but promotes recombinational repair after RAD51 recruitment . Also promotes HR by positively regulating EXO1-mediated DNA end resection of double-strand breaks . Required for recruitment of replication protein RPA2 to DNA damage sites . Promotes the initiation of the G2/M checkpoint but not its maintenance . Catalyzes Holliday junction branch migration and dissociation of D-loops and DNA flaps . . |
Accessions | ENST00000309071.9 [Q86YA3-4] G3XAL8 ENST00000503172.5 ENST00000473015.5 D6REQ7 ENST00000445203.6 [Q86YA3-1] I3L0G6 ENST00000612287.4 [Q86YA3-2] D6REN9 ENST00000445413.6 ENST00000502805.1 ENST00000505019.6 [Q86YA3-1] D6RB47 Q86YA3 ENST00000514770.5 |