Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 4 studies | 22% ± 3% | |
glutamatergic neuron | 4 studies | 40% ± 20% | |
GABAergic neuron | 3 studies | 40% ± 12% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 32% ± 14% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2050.37 | 1445 / 1445 | 100% | 23.19 | 183 / 183 |
kidney | 100% | 3369.20 | 89 / 89 | 100% | 31.99 | 901 / 901 |
lung | 100% | 2605.53 | 578 / 578 | 100% | 25.11 | 1155 / 1155 |
ovary | 100% | 3551.48 | 180 / 180 | 100% | 23.37 | 430 / 430 |
pancreas | 100% | 1885.94 | 328 / 328 | 100% | 39.19 | 178 / 178 |
prostate | 100% | 3285.03 | 245 / 245 | 100% | 28.52 | 502 / 502 |
skin | 100% | 2350.00 | 1809 / 1809 | 100% | 38.46 | 472 / 472 |
stomach | 100% | 2183.53 | 359 / 359 | 100% | 28.35 | 286 / 286 |
brain | 100% | 3846.53 | 2638 / 2642 | 100% | 38.82 | 705 / 705 |
thymus | 100% | 3150.93 | 653 / 653 | 100% | 36.50 | 604 / 605 |
breast | 100% | 2475.15 | 459 / 459 | 100% | 29.21 | 1116 / 1118 |
intestine | 100% | 3284.17 | 966 / 966 | 100% | 33.56 | 526 / 527 |
uterus | 100% | 2961.57 | 170 / 170 | 100% | 27.56 | 458 / 459 |
liver | 100% | 2326.68 | 226 / 226 | 100% | 22.95 | 405 / 406 |
bladder | 100% | 2455.71 | 21 / 21 | 100% | 26.81 | 502 / 504 |
adrenal gland | 100% | 3589.93 | 258 / 258 | 100% | 72.98 | 229 / 230 |
adipose | 100% | 2137.95 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 36.07 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 30.25 | 29 / 29 |
spleen | 100% | 4085.62 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 21.88 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 15.85 | 1 / 1 |
blood vessel | 100% | 2188.82 | 1333 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 1569.46 | 848 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 97% | 2507.47 | 905 / 929 | 0% | 0 | 0 / 0 |
muscle | 94% | 1049.82 | 756 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0072659 | Biological process | protein localization to plasma membrane |
GO_0045773 | Biological process | positive regulation of axon extension |
GO_0071787 | Biological process | endoplasmic reticulum tubular network formation |
GO_0048011 | Biological process | neurotrophin TRK receptor signaling pathway |
GO_0031175 | Biological process | neuron projection development |
GO_0016192 | Biological process | vesicle-mediated transport |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0071782 | Cellular component | endoplasmic reticulum tubular network |
GO_0055038 | Cellular component | recycling endosome membrane |
GO_0005654 | Cellular component | nucleoplasm |
GO_0030425 | Cellular component | dendrite |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005829 | Cellular component | cytosol |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0032584 | Cellular component | growth cone membrane |
GO_0030424 | Cellular component | axon |
GO_0042802 | Molecular function | identical protein binding |
GO_0046872 | Molecular function | metal ion binding |
GO_0005515 | Molecular function | protein binding |
Gene name | ZFYVE27 |
Protein name | Protrudin (Spastic paraplegia 33 protein) (Zinc finger FYVE domain-containing protein 27) Protrudin (Zinc finger FYVE domain-containing protein 27) |
Synonyms | SPG33 |
Description | FUNCTION: Key regulator of RAB11-dependent vesicular trafficking during neurite extension through polarized membrane transport . Promotes axonal elongation and contributes to the establishment of neuronal cell polarity (By similarity). Involved in nerve growth factor-induced neurite formation in VAPA-dependent manner . Contributes to both the formation and stabilization of the tubular ER network . Involved in ER morphogenesis by regulating the sheet-to-tubule balance and possibly the density of tubule interconnections . Acts as an adapter protein and facilitates the interaction of KIF5A with VAPA, VAPB, SURF4, RAB11A, RAB11B and RTN3 and the ZFYVE27-KIF5A complex contributes to the transport of these proteins in neurons. Can induce formation of neurite-like membrane protrusions in non-neuronal cells in a KIF5A/B-dependent manner . . |
Accessions | ENST00000337540.11 [Q5T4F4-8] ENST00000393677.8 [Q5T4F4-1] ENST00000684270.1 [Q5T4F4-1] Q5T4F4 ENST00000370613.7 [Q5T4F4-6] A0A0S2Z5V0 ENST00000359980.5 [Q5T4F4-2] ENST00000423811.3 [Q5T4F4-3] ENST00000357540.8 [Q5T4F4-5] A0A0S2Z627 ENST00000370610.7 [Q5T4F4-7] |