Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 7 studies | 28% ± 7% | |
glutamatergic neuron | 5 studies | 39% ± 17% | |
neuron | 4 studies | 24% ± 6% | |
epithelial cell | 4 studies | 25% ± 5% | |
GABAergic neuron | 4 studies | 33% ± 15% | |
oligodendrocyte precursor cell | 4 studies | 25% ± 6% | |
oligodendrocyte | 4 studies | 23% ± 5% | |
microglial cell | 3 studies | 19% ± 3% | |
astrocyte | 3 studies | 23% ± 3% | |
interneuron | 3 studies | 34% ± 16% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 6792.51 | 1445 / 1445 | 100% | 42.38 | 183 / 183 |
prostate | 100% | 8091.86 | 245 / 245 | 100% | 56.52 | 502 / 502 |
skin | 100% | 7615.97 | 1808 / 1809 | 100% | 69.22 | 471 / 472 |
breast | 100% | 7188.60 | 459 / 459 | 99% | 40.72 | 1111 / 1118 |
thymus | 100% | 14577.64 | 653 / 653 | 99% | 62.76 | 601 / 605 |
stomach | 100% | 5764.20 | 359 / 359 | 99% | 37.19 | 284 / 286 |
brain | 100% | 10361.84 | 2641 / 2642 | 99% | 63.26 | 699 / 705 |
kidney | 100% | 8063.31 | 89 / 89 | 99% | 41.49 | 888 / 901 |
lung | 100% | 8105.14 | 578 / 578 | 99% | 40.01 | 1138 / 1155 |
intestine | 100% | 7061.50 | 966 / 966 | 98% | 34.67 | 518 / 527 |
bladder | 100% | 6929.71 | 21 / 21 | 98% | 30.52 | 493 / 504 |
uterus | 100% | 9210.62 | 170 / 170 | 98% | 33.01 | 448 / 459 |
pancreas | 99% | 4880.60 | 326 / 328 | 98% | 33.96 | 174 / 178 |
ovary | 100% | 11531.19 | 180 / 180 | 96% | 29.78 | 413 / 430 |
adrenal gland | 100% | 11975.85 | 258 / 258 | 95% | 38.09 | 218 / 230 |
liver | 100% | 6377.44 | 226 / 226 | 93% | 26.73 | 379 / 406 |
adipose | 100% | 6708.89 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 6246.54 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 85.13 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 30.23 | 29 / 29 |
spleen | 100% | 7210.75 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 37.91 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 11.80 | 1 / 1 |
muscle | 99% | 3646.33 | 797 / 803 | 0% | 0 | 0 / 0 |
heart | 98% | 4499.92 | 847 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 44% | 2116.47 | 410 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0035196 | Biological process | miRNA processing |
GO_0010608 | Biological process | post-transcriptional regulation of gene expression |
GO_0005634 | Cellular component | nucleus |
GO_0035198 | Molecular function | miRNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0046872 | Molecular function | metal ion binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | ZC3H7B |
Protein name | Zinc finger CCCH domain-containing protein 7B (Rotavirus 'X'-associated non-structural protein) (RoXaN) ZC3H7B protein |
Synonyms | KIAA1031 |
Description | FUNCTION: May be a specific regulator of miRNA biogenesis. Binds to microRNAs MIR7-1, MIR16-2 and MIR29A hairpins recognizing the 'ATA(A/T)' motif in the apical loop. . |
Accessions | Q9UGR2 Q9BSS8 ENST00000352645.5 |