Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 4 studies | 27% ± 6% | |
endothelial cell | 3 studies | 19% ± 3% | |
ciliated cell | 3 studies | 17% ± 1% | |
GABAergic neuron | 3 studies | 23% ± 5% | |
glutamatergic neuron | 3 studies | 28% ± 7% | |
astrocyte | 3 studies | 18% ± 3% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 21% ± 1% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 2481.95 | 459 / 459 | 100% | 31.34 | 1118 / 1118 |
intestine | 100% | 2861.02 | 966 / 966 | 100% | 29.51 | 527 / 527 |
prostate | 100% | 2676.52 | 245 / 245 | 100% | 26.32 | 502 / 502 |
skin | 100% | 2865.52 | 1809 / 1809 | 100% | 32.02 | 472 / 472 |
stomach | 100% | 2057.23 | 359 / 359 | 100% | 31.76 | 286 / 286 |
esophagus | 100% | 2700.89 | 1444 / 1445 | 100% | 39.77 | 183 / 183 |
thymus | 100% | 2929.96 | 653 / 653 | 100% | 32.02 | 604 / 605 |
bladder | 100% | 2725.57 | 21 / 21 | 100% | 25.96 | 503 / 504 |
ovary | 100% | 2971.32 | 180 / 180 | 100% | 29.62 | 429 / 430 |
kidney | 100% | 1715.10 | 89 / 89 | 99% | 20.41 | 895 / 901 |
brain | 100% | 2031.11 | 2635 / 2642 | 100% | 31.90 | 702 / 705 |
pancreas | 100% | 1687.95 | 327 / 328 | 99% | 21.91 | 177 / 178 |
uterus | 100% | 3242.50 | 170 / 170 | 99% | 28.36 | 455 / 459 |
lung | 99% | 2126.75 | 575 / 578 | 99% | 25.73 | 1143 / 1155 |
adrenal gland | 100% | 2077.52 | 258 / 258 | 98% | 19.28 | 225 / 230 |
liver | 100% | 1415.46 | 226 / 226 | 96% | 13.18 | 388 / 406 |
adipose | 100% | 2226.77 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 29.68 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 34.24 | 29 / 29 |
muscle | 100% | 1796.17 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 3360.60 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 31.50 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 27.77 | 1 / 1 |
blood vessel | 100% | 2321.67 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 1407.19 | 852 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 83% | 1736.84 | 775 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0110064 | Biological process | lncRNA catabolic process |
GO_0140744 | Biological process | negative regulation of lncRNA transcription |
GO_0006353 | Biological process | DNA-templated transcription termination |
GO_0032785 | Biological process | negative regulation of DNA-templated transcription, elongation |
GO_0071027 | Biological process | nuclear RNA surveillance |
GO_0005694 | Cellular component | chromosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0005634 | Cellular component | nucleus |
GO_1990841 | Molecular function | promoter-specific chromatin binding |
GO_0005515 | Molecular function | protein binding |
GO_0046872 | Molecular function | metal ion binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | ZC3H4 |
Protein name | Zinc finger CCCH-type containing 4 Zinc finger CCCH domain-containing protein 4 |
Synonyms | KIAA1064 C19orf7 |
Description | FUNCTION: RNA-binding protein that suppresses transcription of long non-coding RNAs (lncRNAs) . LncRNAs are defined as transcripts more than 200 nucleotides that are not translated into protein . Together with WDR82, part of a transcription termination checkpoint that promotes transcription termination of lncRNAs and their subsequent degradation by the exosome . The transcription termination checkpoint is activated by the inefficiently spliced first exon of lncRNAs . . |
Accessions | M0QY97 ENST00000601973.1 ENST00000253048.10 Q9UPT8 |