Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| epithelial cell | 4 studies | 27% ± 6% | |
| endothelial cell | 3 studies | 19% ± 3% | |
| ciliated cell | 3 studies | 17% ± 1% | |
| GABAergic neuron | 3 studies | 23% ± 5% | |
| glutamatergic neuron | 3 studies | 28% ± 7% | |
| astrocyte | 3 studies | 18% ± 3% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| brain | 4 studies | 21% ± 1% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| breast | 100% | 2481.95 | 459 / 459 | 100% | 31.34 | 1118 / 1118 |
| intestine | 100% | 2861.02 | 966 / 966 | 100% | 29.51 | 527 / 527 |
| prostate | 100% | 2676.52 | 245 / 245 | 100% | 26.32 | 502 / 502 |
| skin | 100% | 2865.52 | 1809 / 1809 | 100% | 32.02 | 472 / 472 |
| stomach | 100% | 2057.23 | 359 / 359 | 100% | 31.76 | 286 / 286 |
| esophagus | 100% | 2700.89 | 1444 / 1445 | 100% | 39.77 | 183 / 183 |
| thymus | 100% | 2929.96 | 653 / 653 | 100% | 32.02 | 604 / 605 |
| bladder | 100% | 2725.57 | 21 / 21 | 100% | 25.96 | 503 / 504 |
| ovary | 100% | 2971.32 | 180 / 180 | 100% | 29.62 | 429 / 430 |
| kidney | 100% | 1715.10 | 89 / 89 | 99% | 20.41 | 895 / 901 |
| brain | 100% | 2031.11 | 2635 / 2642 | 100% | 31.90 | 702 / 705 |
| pancreas | 100% | 1687.95 | 327 / 328 | 99% | 21.91 | 177 / 178 |
| uterus | 100% | 3242.50 | 170 / 170 | 99% | 28.36 | 455 / 459 |
| lung | 99% | 2126.75 | 575 / 578 | 99% | 25.73 | 1143 / 1155 |
| adrenal gland | 100% | 2077.52 | 258 / 258 | 98% | 19.28 | 225 / 230 |
| liver | 100% | 1415.46 | 226 / 226 | 96% | 13.18 | 388 / 406 |
| adipose | 100% | 2226.77 | 1204 / 1204 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 100% | 29.68 | 80 / 80 |
| lymph node | 0% | 0 | 0 / 0 | 100% | 34.24 | 29 / 29 |
| muscle | 100% | 1796.17 | 803 / 803 | 0% | 0 | 0 / 0 |
| spleen | 100% | 3360.60 | 241 / 241 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 100% | 31.50 | 45 / 45 |
| ureter | 0% | 0 | 0 / 0 | 100% | 27.77 | 1 / 1 |
| blood vessel | 100% | 2321.67 | 1334 / 1335 | 0% | 0 | 0 / 0 |
| heart | 99% | 1407.19 | 852 / 861 | 0% | 0 | 0 / 0 |
| peripheral blood | 83% | 1736.84 | 775 / 929 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0110064 | Biological process | lncRNA catabolic process |
| GO_0140744 | Biological process | negative regulation of lncRNA transcription |
| GO_0006353 | Biological process | DNA-templated transcription termination |
| GO_0032785 | Biological process | negative regulation of DNA-templated transcription, elongation |
| GO_0071027 | Biological process | nuclear RNA surveillance |
| GO_0005694 | Cellular component | chromosome |
| GO_0005654 | Cellular component | nucleoplasm |
| GO_0005829 | Cellular component | cytosol |
| GO_0005634 | Cellular component | nucleus |
| GO_1990841 | Molecular function | promoter-specific chromatin binding |
| GO_0005515 | Molecular function | protein binding |
| GO_0046872 | Molecular function | metal ion binding |
| GO_0003723 | Molecular function | RNA binding |
| Gene name | ZC3H4 |
| Protein name | Zinc finger CCCH-type containing 4 Zinc finger CCCH domain-containing protein 4 |
| Synonyms | KIAA1064 C19orf7 |
| Description | FUNCTION: RNA-binding protein that suppresses transcription of long non-coding RNAs (lncRNAs) . LncRNAs are defined as transcripts more than 200 nucleotides that are not translated into protein . Together with WDR82, part of a transcription termination checkpoint that promotes transcription termination of lncRNAs and their subsequent degradation by the exosome . The transcription termination checkpoint is activated by the inefficiently spliced first exon of lncRNAs . . |
| Accessions | M0QY97 ENST00000601973.1 ENST00000253048.10 Q9UPT8 |