Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 19 studies | 34% ± 10% | |
fibroblast | 12 studies | 22% ± 4% | |
astrocyte | 11 studies | 32% ± 13% | |
glutamatergic neuron | 10 studies | 42% ± 24% | |
oligodendrocyte precursor cell | 9 studies | 29% ± 11% | |
GABAergic neuron | 9 studies | 38% ± 19% | |
neuron | 8 studies | 41% ± 14% | |
endothelial cell | 7 studies | 27% ± 15% | |
type I pneumocyte | 7 studies | 25% ± 6% | |
interneuron | 6 studies | 39% ± 19% | |
macrophage | 6 studies | 19% ± 8% | |
retinal ganglion cell | 6 studies | 56% ± 18% | |
pericyte | 6 studies | 19% ± 3% | |
connective tissue cell | 5 studies | 23% ± 5% | |
smooth muscle cell | 5 studies | 17% ± 1% | |
epithelial cell | 4 studies | 24% ± 7% | |
granule cell | 4 studies | 23% ± 4% | |
myofibroblast cell | 4 studies | 22% ± 4% | |
retina horizontal cell | 4 studies | 23% ± 4% | |
oligodendrocyte | 4 studies | 24% ± 3% | |
progenitor cell | 3 studies | 29% ± 5% | |
amacrine cell | 3 studies | 25% ± 9% | |
GABAergic amacrine cell | 3 studies | 28% ± 4% | |
glycinergic amacrine cell | 3 studies | 20% ± 3% | |
ependymal cell | 3 studies | 35% ± 12% | |
endothelial cell of lymphatic vessel | 3 studies | 22% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 839.84 | 245 / 245 | 100% | 12.05 | 500 / 502 |
brain | 99% | 1113.36 | 2620 / 2642 | 100% | 11.19 | 703 / 705 |
thymus | 100% | 1204.59 | 653 / 653 | 98% | 20.20 | 593 / 605 |
ovary | 100% | 1435.87 | 180 / 180 | 98% | 9.85 | 421 / 430 |
lung | 100% | 819.72 | 576 / 578 | 97% | 9.96 | 1118 / 1155 |
kidney | 98% | 479.19 | 87 / 89 | 96% | 9.60 | 868 / 901 |
bladder | 100% | 886.38 | 21 / 21 | 93% | 8.57 | 471 / 504 |
breast | 100% | 897.22 | 459 / 459 | 92% | 9.79 | 1033 / 1118 |
esophagus | 100% | 735.83 | 1443 / 1445 | 92% | 7.81 | 168 / 183 |
skin | 100% | 1211.34 | 1807 / 1809 | 89% | 7.40 | 421 / 472 |
uterus | 100% | 1364.53 | 170 / 170 | 87% | 7.39 | 399 / 459 |
adrenal gland | 90% | 279.93 | 233 / 258 | 94% | 10.88 | 217 / 230 |
intestine | 98% | 685.39 | 943 / 966 | 84% | 5.26 | 444 / 527 |
pancreas | 77% | 216.90 | 254 / 328 | 98% | 8.48 | 174 / 178 |
stomach | 87% | 387.28 | 312 / 359 | 87% | 5.91 | 250 / 286 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.01 | 1 / 1 |
blood vessel | 100% | 914.61 | 1334 / 1335 | 0% | 0 | 0 / 0 |
adipose | 99% | 743.17 | 1190 / 1204 | 0% | 0 | 0 / 0 |
spleen | 98% | 371.98 | 235 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 87% | 7.89 | 39 / 45 |
heart | 85% | 330.67 | 732 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 56% | 3.80 | 45 / 80 |
lymph node | 0% | 0 | 0 / 0 | 45% | 1.83 | 13 / 29 |
liver | 5% | 11.92 | 11 / 226 | 32% | 1.46 | 128 / 406 |
muscle | 26% | 63.12 | 205 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 19% | 163.06 | 181 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0046872 | Molecular function | metal ion binding |
GO_0005515 | Molecular function | protein binding |
Gene name | ZC2HC1A |
Protein name | Zinc finger C2HC-type containing 1A Zinc finger C2HC domain-containing protein 1A |
Synonyms | CGI-62 C8orf70 FAM164A |
Description | |
Accessions | ENST00000519307.2 Q96GY0 ENST00000263849.9 ENST00000705981.1 ENST00000705982.1 H0YAP0 A0A994J504 A0A994J7X1 |