XAB2 | OmnibusX

Name	Number of supported studies	Average coverage
epithelial cell	3 studies	35% ± 14%	Explore

sc-RNAseq data

Insufficient scRNA-seq data for expression of XAB2 at tissue level.

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	3355.14	1445 / 1445	100%	42.78	183 / 183
liver	100%	2012.86	226 / 226	100%	35.46	406 / 406
ovary	100%	5920.80	180 / 180	100%	53.74	430 / 430
pancreas	100%	2730.33	328 / 328	100%	44.51	178 / 178
thymus	100%	5259.80	653 / 653	100%	71.73	605 / 605
uterus	100%	5288.95	170 / 170	100%	55.96	459 / 459
prostate	100%	4824.53	245 / 245	100%	66.86	501 / 502
stomach	100%	3272.23	359 / 359	100%	43.94	285 / 286
adrenal gland	100%	3047.86	258 / 258	100%	51.94	229 / 230
intestine	100%	3674.06	966 / 966	99%	45.68	524 / 527
brain	99%	2811.28	2626 / 2642	100%	59.89	705 / 705
breast	100%	4479.40	459 / 459	99%	52.11	1111 / 1118
skin	100%	4381.31	1809 / 1809	99%	59.34	469 / 472
kidney	100%	3390.18	89 / 89	99%	39.67	895 / 901
bladder	100%	3953.95	21 / 21	99%	50.62	498 / 504
lung	100%	3899.81	578 / 578	99%	40.38	1139 / 1155
adipose	100%	3753.40	1204 / 1204	0%	0	0 / 0
blood vessel	100%	3678.74	1335 / 1335	0%	0	0 / 0
eye	0%	0	0 / 0	100%	77.32	80 / 80
lymph node	0%	0	0 / 0	100%	74.77	29 / 29
muscle	100%	2693.95	803 / 803	0%	0	0 / 0
spleen	100%	4836.20	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	52.82	45 / 45
ureter	0%	0	0 / 0	100%	45.73	1 / 1
heart	99%	2016.33	852 / 861	0%	0	0 / 0
peripheral blood	99%	3393.89	918 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

GO_0000398	Biological process	mRNA splicing, via spliceosome
GO_0006351	Biological process	DNA-templated transcription
GO_0001824	Biological process	blastocyst development
GO_0006283	Biological process	transcription-coupled nucleotide-excision repair
GO_0000349	Biological process	generation of catalytic spliceosome for first transesterification step
GO_0043231	Cellular component	intracellular membrane-bounded organelle
GO_0071014	Cellular component	post-mRNA release spliceosomal complex
GO_0071013	Cellular component	catalytic step 2 spliceosome
GO_0005634	Cellular component	nucleus
GO_0005654	Cellular component	nucleoplasm
GO_0071007	Cellular component	U2-type catalytic step 2 spliceosome
GO_0000974	Cellular component	Prp19 complex
GO_0016020	Cellular component	membrane
GO_0005515	Molecular function	protein binding

Gene name	XAB2
Protein name	Pre-mRNA-splicing factor SYF1 (Protein HCNP) (XPA-binding protein 2)
Synonyms	SYF1 HCNP PP3898 KIAA1177
Description	FUNCTION: Involved in pre-mRNA splicing as component of the spliceosome . Involved in transcription-coupled repair (TCR), transcription and pre-mRNA splicing . .
Accessions	Q9HCS7 ENST00000358368.5

XAB2 report