Name | Number of supported studies | Average coverage | |
---|---|---|---|
classical monocyte | 6 studies | 21% ± 8% | |
myeloid cell | 5 studies | 18% ± 1% | |
macrophage | 5 studies | 20% ± 3% | |
epithelial cell | 4 studies | 24% ± 7% | |
plasmacytoid dendritic cell | 3 studies | 18% ± 3% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 3 studies | 32% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2518.43 | 1445 / 1445 | 100% | 22.85 | 183 / 183 |
lung | 100% | 3089.51 | 578 / 578 | 100% | 16.65 | 1155 / 1155 |
prostate | 100% | 2788.21 | 245 / 245 | 100% | 22.99 | 502 / 502 |
uterus | 100% | 3169.76 | 170 / 170 | 100% | 16.15 | 459 / 459 |
breast | 100% | 3314.63 | 459 / 459 | 100% | 22.58 | 1117 / 1118 |
thymus | 100% | 3168.49 | 653 / 653 | 100% | 21.92 | 604 / 605 |
brain | 100% | 2104.69 | 2636 / 2642 | 100% | 20.30 | 705 / 705 |
ovary | 100% | 3331.76 | 180 / 180 | 100% | 16.13 | 429 / 430 |
stomach | 100% | 1982.55 | 359 / 359 | 100% | 17.07 | 285 / 286 |
bladder | 100% | 3053.52 | 21 / 21 | 100% | 15.26 | 502 / 504 |
kidney | 100% | 2525.73 | 89 / 89 | 99% | 19.87 | 894 / 901 |
adrenal gland | 100% | 2790.55 | 258 / 258 | 99% | 15.58 | 228 / 230 |
intestine | 100% | 3485.66 | 966 / 966 | 99% | 14.96 | 522 / 527 |
skin | 100% | 3123.22 | 1809 / 1809 | 99% | 17.65 | 466 / 472 |
pancreas | 98% | 1229.62 | 323 / 328 | 100% | 16.92 | 178 / 178 |
liver | 98% | 1132.73 | 222 / 226 | 99% | 13.41 | 403 / 406 |
adipose | 100% | 3182.23 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2821.31 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 24.34 | 29 / 29 |
spleen | 100% | 3894.77 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 16.36 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 4.00 | 1 / 1 |
muscle | 99% | 1556.11 | 797 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 99% | 2502.49 | 920 / 929 | 0% | 0 | 0 / 0 |
heart | 97% | 2058.16 | 839 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 96% | 17.74 | 77 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_2000813 | Biological process | negative regulation of barbed-end actin filament capping |
GO_0032456 | Biological process | endocytic recycling |
GO_0042147 | Biological process | retrograde transport, endosome to Golgi |
GO_0016197 | Biological process | endosomal transport |
GO_1900024 | Biological process | regulation of substrate adhesion-dependent cell spreading |
GO_0015031 | Biological process | protein transport |
GO_0034315 | Biological process | regulation of Arp2/3 complex-mediated actin nucleation |
GO_0036010 | Biological process | protein localization to endosome |
GO_0005730 | Cellular component | nucleolus |
GO_0005886 | Cellular component | plasma membrane |
GO_0005769 | Cellular component | early endosome |
GO_0031901 | Cellular component | early endosome membrane |
GO_0005829 | Cellular component | cytosol |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0071203 | Cellular component | WASH complex |
GO_0005768 | Cellular component | endosome |
GO_1905394 | Molecular function | retromer complex binding |
GO_0005547 | Molecular function | phosphatidylinositol-3,4,5-trisphosphate binding |
GO_0070273 | Molecular function | phosphatidylinositol-4-phosphate binding |
GO_0005546 | Molecular function | phosphatidylinositol-4,5-bisphosphate binding |
GO_0032266 | Molecular function | phosphatidylinositol-3-phosphate binding |
GO_0080025 | Molecular function | phosphatidylinositol-3,5-bisphosphate binding |
GO_1901981 | Molecular function | phosphatidylinositol phosphate binding |
GO_0005515 | Molecular function | protein binding |
GO_0010314 | Molecular function | phosphatidylinositol-5-phosphate binding |
GO_0043325 | Molecular function | phosphatidylinositol-3,4-bisphosphate binding |
Gene name | WASHC2C |
Protein name | WASH complex subunit 2C (Vaccinia virus penetration factor) (VPEF) WASH complex subunit 2C |
Synonyms | KIAA0592 FAM21C VPEF |
Description | FUNCTION: Acts as a component of the WASH core complex that functions as a nucleation-promoting factor (NPF) at the surface of endosomes, where it recruits and activates the Arp2/3 complex to induce actin polymerization, playing a key role in the fission of tubules that serve as transport intermediates during endosome sorting. Mediates the recruitment of the WASH core complex to endosome membranes via binding to phospholipids and VPS35 of the retromer CSC. Mediates the recruitment of the F-actin-capping protein dimer to the WASH core complex probably promoting localized F-actin polymerization needed for vesicle scission . Via its C-terminus binds various phospholipids, most strongly phosphatidylinositol 4-phosphate (PtdIns-(4)P), phosphatidylinositol 5-phosphate (PtdIns-(5)P) and phosphatidylinositol 3,5-bisphosphate (PtdIns-(3,5)P2). Involved in the endosome-to-plasma membrane trafficking and recycling of SNX27-retromer-dependent cargo proteins, such as GLUT1 . Required for the association of DNAJC13, ENTR1, ANKRD50 with retromer CSC subunit VPS35 . Required for the endosomal recruitment of CCC and retriever complexes subunits COMMD1 and CCDC93 as well as the retrievere complex subunit VPS35L . .; FUNCTION: (Microbial infection) Plays a role in fluid-phase endocytosis, a process exploited by vaccinia intracellular mature virus (IMV) to enter cells. As a result, may facilitate the penetration of IMV into cells. . |
Accessions | J3KP36 ENST00000537517.6 [Q9Y4E1-5] ENST00000623400.4 [Q9Y4E1-7] ENST00000540872.6 [Q9Y4E1-6] Q9Y4E1 ENST00000420848.3 ENST00000374362.6 [Q9Y4E1-4] ENST00000359860.7 A0A0A0MT65 |