Name | Number of supported studies | Average coverage | |
---|---|---|---|
macrophage | 5 studies | 17% ± 2% | |
ciliated cell | 4 studies | 25% ± 11% | |
myeloid cell | 4 studies | 19% ± 3% | |
epithelial cell | 4 studies | 26% ± 9% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 3 studies | 30% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2674.65 | 1445 / 1445 | 100% | 26.73 | 183 / 183 |
lung | 100% | 3575.10 | 578 / 578 | 100% | 19.68 | 1155 / 1155 |
ovary | 100% | 3312.39 | 180 / 180 | 100% | 20.32 | 430 / 430 |
prostate | 100% | 2903.51 | 245 / 245 | 100% | 35.50 | 502 / 502 |
stomach | 100% | 2086.73 | 359 / 359 | 100% | 21.79 | 286 / 286 |
breast | 100% | 3342.66 | 459 / 459 | 100% | 27.29 | 1117 / 1118 |
thymus | 100% | 3274.51 | 653 / 653 | 100% | 26.02 | 604 / 605 |
brain | 100% | 2305.54 | 2637 / 2642 | 100% | 23.93 | 705 / 705 |
bladder | 100% | 3215.38 | 21 / 21 | 100% | 18.40 | 503 / 504 |
uterus | 100% | 3122.42 | 170 / 170 | 100% | 19.71 | 458 / 459 |
kidney | 100% | 2589.89 | 89 / 89 | 100% | 22.26 | 898 / 901 |
intestine | 100% | 3576.23 | 966 / 966 | 99% | 18.95 | 524 / 527 |
skin | 100% | 3510.60 | 1809 / 1809 | 99% | 22.77 | 467 / 472 |
adrenal gland | 100% | 3232.44 | 258 / 258 | 99% | 18.41 | 227 / 230 |
liver | 99% | 1089.10 | 223 / 226 | 100% | 17.31 | 405 / 406 |
pancreas | 98% | 1218.72 | 322 / 328 | 99% | 20.32 | 176 / 178 |
adipose | 100% | 3176.09 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2953.77 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 28.53 | 29 / 29 |
spleen | 100% | 3514.49 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 20.91 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 9.02 | 1 / 1 |
muscle | 100% | 1775.78 | 799 / 803 | 0% | 0 | 0 / 0 |
heart | 98% | 3757.77 | 843 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 98% | 22.52 | 78 / 80 |
peripheral blood | 95% | 1687.39 | 883 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0042147 | Biological process | retrograde transport, endosome to Golgi |
GO_0015031 | Biological process | protein transport |
GO_0016197 | Biological process | endosomal transport |
GO_0034315 | Biological process | regulation of Arp2/3 complex-mediated actin nucleation |
GO_0036010 | Biological process | protein localization to endosome |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0005730 | Cellular component | nucleolus |
GO_0031901 | Cellular component | early endosome membrane |
GO_0071203 | Cellular component | WASH complex |
GO_0005829 | Cellular component | cytosol |
GO_0005886 | Cellular component | plasma membrane |
GO_0005769 | Cellular component | early endosome |
GO_1905394 | Molecular function | retromer complex binding |
GO_1901981 | Molecular function | phosphatidylinositol phosphate binding |
GO_0005515 | Molecular function | protein binding |
Gene name | WASHC2A |
Protein name | FAM21A protein WASH complex subunit 2A |
Synonyms | FAM21A FAM21B |
Description | FUNCTION: Acts at least in part as component of the WASH core complex whose assembly at the surface of endosomes inhibits WASH nucleation-promoting factor (NPF) activity in recruiting and activating the Arp2/3 complex to induce actin polymerization and is involved in the fission of tubules that serve as transport intermediates during endosome sorting. Mediates the recruitment of the WASH core complex to endosome membranes via binding to phospholipids and VPS35 of the retromer CSC. Mediates the recruitment of the F-actin-capping protein dimer to the WASH core complex probably promoting localized F-actin polymerization needed for vesicle scission. Via its C-terminus binds various phospholipids, most strongly phosphatidylinositol 4-phosphate (PtdIns-(4)P), phosphatidylinositol 5-phosphate (PtdIns-(5)P) and phosphatidylinositol 3,5-bisphosphate (PtdIns-(3,5)P2). Involved in the endosome-to-plasma membrane trafficking and recycling of SNX27-retromer-dependent cargo proteins, such as GLUT1. Required for the association of DNAJC13, ENTR1, ANKRD50 with retromer CSC subunit VPS35. Required for the endosomal recruitment of CCC complex subunits COMMD1 and CCDC93 as well as the retriever complex subunit VPS35L. . |
Accessions | Q641Q2 ENST00000399339.6 ENST00000351071.11 [Q641Q2-2] A0A087WYF6 ENST00000314664.12 F8W7U3 ENST00000611324.4 Q5T1D7 E7ESD2 Q6P0Q7 ENST00000434114.6 B1AP61 ENST00000454806.1 B7ZME8 ENST00000282633.10 [Q641Q2-1] |