Name | Number of supported studies | Average coverage | |
---|---|---|---|
glutamatergic neuron | 10 studies | 43% ± 27% | |
endothelial cell | 9 studies | 25% ± 6% | |
astrocyte | 9 studies | 30% ± 14% | |
oligodendrocyte | 9 studies | 28% ± 10% | |
GABAergic neuron | 7 studies | 45% ± 23% | |
microglial cell | 7 studies | 27% ± 9% | |
oligodendrocyte precursor cell | 7 studies | 33% ± 12% | |
adipocyte | 5 studies | 22% ± 4% | |
fibroblast | 5 studies | 18% ± 4% | |
macrophage | 5 studies | 36% ± 5% | |
interneuron | 5 studies | 47% ± 24% | |
epithelial cell | 4 studies | 26% ± 12% | |
endothelial cell of lymphatic vessel | 4 studies | 24% ± 3% | |
neuron | 3 studies | 33% ± 11% | |
dendritic cell | 3 studies | 19% ± 2% | |
alveolar macrophage | 3 studies | 26% ± 7% | |
monocyte | 3 studies | 23% ± 2% | |
type I pneumocyte | 3 studies | 21% ± 5% | |
smooth muscle cell | 3 studies | 17% ± 1% | |
granule cell | 3 studies | 23% ± 5% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 11 studies | 37% ± 22% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1500.59 | 1445 / 1445 | 100% | 11.95 | 183 / 183 |
brain | 100% | 1839.37 | 2638 / 2642 | 100% | 12.75 | 705 / 705 |
breast | 100% | 1642.12 | 459 / 459 | 99% | 13.45 | 1112 / 1118 |
prostate | 100% | 1300.31 | 245 / 245 | 99% | 8.48 | 497 / 502 |
stomach | 100% | 1169.73 | 359 / 359 | 99% | 9.01 | 283 / 286 |
thymus | 100% | 1466.88 | 653 / 653 | 99% | 7.75 | 598 / 605 |
uterus | 100% | 1530.85 | 170 / 170 | 99% | 7.85 | 453 / 459 |
kidney | 100% | 1236.00 | 89 / 89 | 99% | 8.61 | 889 / 901 |
bladder | 100% | 1445.33 | 21 / 21 | 99% | 7.77 | 497 / 504 |
ovary | 100% | 1349.78 | 180 / 180 | 99% | 5.60 | 424 / 430 |
lung | 99% | 1218.33 | 570 / 578 | 100% | 8.97 | 1154 / 1155 |
intestine | 100% | 1619.79 | 966 / 966 | 98% | 8.67 | 517 / 527 |
adrenal gland | 100% | 1656.85 | 258 / 258 | 98% | 9.17 | 225 / 230 |
pancreas | 99% | 825.64 | 326 / 328 | 98% | 7.53 | 175 / 178 |
skin | 100% | 1552.38 | 1809 / 1809 | 94% | 9.59 | 444 / 472 |
liver | 100% | 637.03 | 225 / 226 | 90% | 4.37 | 366 / 406 |
spleen | 100% | 1793.31 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 2.13 | 1 / 1 |
blood vessel | 100% | 1379.73 | 1333 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 1289.67 | 801 / 803 | 0% | 0 | 0 / 0 |
adipose | 100% | 1336.42 | 1201 / 1204 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 8.64 | 44 / 45 |
lymph node | 0% | 0 | 0 / 0 | 97% | 6.88 | 28 / 29 |
heart | 96% | 881.43 | 827 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 70% | 4.23 | 56 / 80 |
peripheral blood | 65% | 542.82 | 604 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0042147 | Biological process | retrograde transport, endosome to Golgi |
GO_0015031 | Biological process | protein transport |
GO_0032456 | Biological process | endocytic recycling |
GO_0070062 | Cellular component | extracellular exosome |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0016020 | Cellular component | membrane |
GO_0055037 | Cellular component | recycling endosome |
GO_1990745 | Cellular component | EARP complex |
GO_0000149 | Molecular function | SNARE binding |
GO_0005515 | Molecular function | protein binding |
Gene name | VPS50 |
Protein name | VPS50 subunit of EARP/GARPII complex Syndetin (Coiled-coil domain-containing protein 132) (EARP/GARPII complex subunit VPS50) CCDC132 protein |
Synonyms | CCDC132 KIAA1861 |
Description | FUNCTION: Acts as a component of the EARP complex that is involved in endocytic recycling. The EARP complex associates with Rab4-positive endosomes and promotes recycling of internalized transferrin receptor (TFRC) to the plasma membrane. Within the EARP complex, required to tether the complex to recycling endosomes. Not involved in retrograde transport from early and late endosomes to the trans-Golgi network (TGN). . |
Accessions | Q96JG6 F2Z3F0 A7MD03 ENST00000436177.5 F8WDT1 ENST00000544910.5 [Q96JG6-3] C9JA29 ENST00000458530.1 ENST00000305866.10 [Q96JG6-1] ENST00000443443.1 ENST00000441602.5 A0A3B3IRQ5 ENST00000649152.1 ENST00000458707.1 ENST00000251739.9 [Q96JG6-2] H7BZP1 H0Y7Q2 ENST00000438395.5 |