Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 11 studies | 25% ± 12% | |
oligodendrocyte precursor cell | 9 studies | 30% ± 13% | |
astrocyte | 9 studies | 36% ± 15% | |
glutamatergic neuron | 8 studies | 38% ± 24% | |
GABAergic neuron | 7 studies | 39% ± 21% | |
microglial cell | 7 studies | 25% ± 7% | |
adipocyte | 7 studies | 25% ± 5% | |
interneuron | 6 studies | 43% ± 23% | |
oligodendrocyte | 6 studies | 25% ± 8% | |
macrophage | 5 studies | 30% ± 7% | |
epithelial cell | 5 studies | 26% ± 9% | |
neuron | 4 studies | 24% ± 7% | |
granule cell | 4 studies | 24% ± 5% | |
cardiac muscle cell | 4 studies | 27% ± 1% | |
fibroblast | 4 studies | 23% ± 7% | |
smooth muscle cell | 4 studies | 24% ± 4% | |
GABAergic interneuron | 3 studies | 27% ± 3% | |
retina horizontal cell | 3 studies | 18% ± 3% | |
dendritic cell | 3 studies | 18% ± 2% | |
endothelial cell of lymphatic vessel | 3 studies | 19% ± 1% | |
monocyte | 3 studies | 18% ± 1% | |
lymphocyte | 3 studies | 22% ± 5% | |
pericyte | 3 studies | 22% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 2269.87 | 459 / 459 | 100% | 33.44 | 1118 / 1118 |
esophagus | 100% | 2817.68 | 1445 / 1445 | 100% | 17.72 | 183 / 183 |
lung | 100% | 1849.04 | 578 / 578 | 100% | 21.23 | 1155 / 1155 |
ovary | 100% | 1949.32 | 180 / 180 | 100% | 20.11 | 430 / 430 |
prostate | 100% | 2601.41 | 245 / 245 | 100% | 19.11 | 502 / 502 |
uterus | 100% | 2678.30 | 170 / 170 | 100% | 28.61 | 459 / 459 |
brain | 100% | 3214.80 | 2641 / 2642 | 100% | 35.31 | 705 / 705 |
thymus | 100% | 2542.17 | 653 / 653 | 100% | 22.66 | 604 / 605 |
bladder | 100% | 2590.38 | 21 / 21 | 100% | 21.61 | 503 / 504 |
skin | 100% | 2252.51 | 1809 / 1809 | 99% | 25.69 | 469 / 472 |
intestine | 100% | 2605.51 | 966 / 966 | 99% | 13.06 | 522 / 527 |
stomach | 100% | 2028.42 | 359 / 359 | 99% | 14.04 | 283 / 286 |
adrenal gland | 100% | 3625.38 | 258 / 258 | 99% | 18.69 | 227 / 230 |
kidney | 100% | 1976.70 | 89 / 89 | 98% | 14.00 | 886 / 901 |
pancreas | 99% | 959.16 | 325 / 328 | 99% | 17.59 | 176 / 178 |
liver | 99% | 991.20 | 223 / 226 | 99% | 13.62 | 401 / 406 |
adipose | 100% | 2050.55 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2998.16 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 17.03 | 29 / 29 |
spleen | 100% | 2477.88 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 19.35 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 10.02 | 1 / 1 |
muscle | 99% | 1468.33 | 796 / 803 | 0% | 0 | 0 / 0 |
heart | 98% | 2467.56 | 844 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 96% | 14.84 | 77 / 80 |
peripheral blood | 77% | 849.40 | 712 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0016192 | Biological process | vesicle-mediated transport |
GO_0006886 | Biological process | intracellular protein transport |
GO_0005575 | Cellular component | cellular_component |
GO_0010008 | Cellular component | endosome membrane |
GO_0000139 | Cellular component | Golgi membrane |
GO_0008021 | Cellular component | synaptic vesicle |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0016020 | Cellular component | membrane |
GO_0005515 | Molecular function | protein binding |
GO_0003674 | Molecular function | molecular_function |
Gene name | VPS45 |
Protein name | Vacuolar protein sorting 45 homolog (cDNA FLJ52026, highly similar to Vacuolar protein sorting-associated protein 45) Vacuolar protein sorting 45 homolog (S. cerevisiae) Vacuolar protein sorting-associated protein 45 (h-VPS45) (hlVps45) Vacuolar protein sorting 45 homolog |
Synonyms | RP11-458I7.2-010 VPS45A VPS45B |
Description | FUNCTION: May play a role in vesicle-mediated protein trafficking from the Golgi stack through the trans-Golgi network. |
Accessions | ENST00000698586.1 ENST00000698528.1 A0A8V8TLX8 ENST00000698579.1 A0A8V8TMF8 A0A8V8TNM6 A0A2R8YD95 ENST00000644704.2 A0A8V8TLX3 ENST00000698594.1 A0A8V8TMC6 ENST00000698588.1 ENST00000698527.1 A0A8V8TNG0 ENST00000644510.2 [Q9NRW7-1] ENST00000369128.9 [Q9NRW7-2] ENST00000698598.1 ENST00000698595.1 ENST00000698584.1 ENST00000698534.1 A0A8V8TNQ5 ENST00000491789.2 B7Z7G7 A0A2R8Y7W9 ENST00000644526.2 A0A1B0GXI6 ENST00000698581.1 A0A8V8TM05 ENST00000698533.1 A0A8V8TNB6 ENST00000698593.1 ENST00000698580.1 ENST00000698583.1 A0A8V8TMD1 ENST00000462852.5 A0A8V8TLW3 ENST00000642919.2 ENST00000643611.1 A0A8V8TMH2 A0A8V8TNF5 Q9NRW7 ENST00000419023.4 ENST00000698590.1 ENST00000698523.1 A0A8V8TMG3 ENST00000698578.1 A0A2R8YF01 ENST00000698591.1 A0A8V8TNF0 A0A2R8YEX8 ENST00000698597.1 A0A8V8TLZ5 Q5T4Q0 A0A8V8TNR0 ENST00000698582.1 A0A8V8TLU0 ENST00000643970.2 ENST00000698592.1 A0A8V8TM00 A0A8V8TMG7 ENST00000698585.1 ENST00000698532.1 A0A8V8TNE7 ENST00000698587.1 A0A8V8TM10 A0A2R8YE10 A0A2R8YDP1 |