Name | Number of supported studies | Average coverage | |
---|---|---|---|
retinal cone cell | 3 studies | 23% ± 6% | |
GABAergic neuron | 3 studies | 22% ± 7% | |
glutamatergic neuron | 3 studies | 24% ± 6% | |
oligodendrocyte | 3 studies | 18% ± 2% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 20% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
kidney | 99% | 1725.66 | 88 / 89 | 99% | 16.51 | 891 / 901 |
adrenal gland | 100% | 3074.58 | 258 / 258 | 93% | 19.14 | 215 / 230 |
prostate | 94% | 1445.64 | 230 / 245 | 88% | 5.57 | 440 / 502 |
pancreas | 100% | 2959.06 | 328 / 328 | 81% | 4.04 | 145 / 178 |
uterus | 99% | 2413.65 | 168 / 170 | 82% | 7.70 | 376 / 459 |
thymus | 100% | 2652.50 | 652 / 653 | 79% | 6.19 | 477 / 605 |
skin | 85% | 871.71 | 1534 / 1809 | 94% | 13.89 | 442 / 472 |
lung | 99% | 2240.69 | 575 / 578 | 78% | 5.55 | 903 / 1155 |
breast | 98% | 1786.02 | 451 / 459 | 79% | 5.32 | 881 / 1118 |
brain | 94% | 1519.87 | 2482 / 2642 | 83% | 4.63 | 584 / 705 |
ovary | 100% | 14211.36 | 180 / 180 | 75% | 4.42 | 321 / 430 |
esophagus | 100% | 2531.13 | 1443 / 1445 | 69% | 4.55 | 127 / 183 |
bladder | 100% | 2421.19 | 21 / 21 | 53% | 3.10 | 266 / 504 |
stomach | 100% | 1407.31 | 358 / 359 | 31% | 1.56 | 88 / 286 |
intestine | 70% | 816.83 | 676 / 966 | 33% | 1.43 | 173 / 527 |
blood vessel | 100% | 2915.35 | 1329 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 3325.85 | 799 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 24.66 | 79 / 80 |
adipose | 99% | 2463.64 | 1188 / 1204 | 0% | 0 | 0 / 0 |
heart | 98% | 6018.64 | 846 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 96% | 10.93 | 43 / 45 |
spleen | 95% | 1263.29 | 228 / 241 | 0% | 0 | 0 / 0 |
liver | 23% | 232.04 | 51 / 226 | 20% | 1.72 | 82 / 406 |
peripheral blood | 17% | 226.55 | 159 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0034436 | Biological process | glycoprotein transport |
GO_0034447 | Biological process | very-low-density lipoprotein particle clearance |
GO_0006898 | Biological process | receptor-mediated endocytosis |
GO_0048813 | Biological process | dendrite morphogenesis |
GO_0021517 | Biological process | ventral spinal cord development |
GO_0007165 | Biological process | signal transduction |
GO_0008203 | Biological process | cholesterol metabolic process |
GO_1900006 | Biological process | positive regulation of dendrite development |
GO_0038026 | Biological process | reelin-mediated signaling pathway |
GO_0007613 | Biological process | memory |
GO_0007399 | Biological process | nervous system development |
GO_0006869 | Biological process | lipid transport |
GO_0043235 | Cellular component | receptor complex |
GO_0005886 | Cellular component | plasma membrane |
GO_0016020 | Cellular component | membrane |
GO_0034361 | Cellular component | very-low-density lipoprotein particle |
GO_0005905 | Cellular component | clathrin-coated pit |
GO_0005765 | Cellular component | lysosomal membrane |
GO_0038025 | Molecular function | reelin receptor activity |
GO_0038024 | Molecular function | cargo receptor activity |
GO_0034185 | Molecular function | apolipoprotein binding |
GO_0048306 | Molecular function | calcium-dependent protein binding |
GO_0005041 | Molecular function | low-density lipoprotein particle receptor activity |
GO_0030229 | Molecular function | very-low-density lipoprotein particle receptor activity |
GO_0005509 | Molecular function | calcium ion binding |
GO_0034189 | Molecular function | very-low-density lipoprotein particle binding |
GO_0005515 | Molecular function | protein binding |
Gene name | VLDLR |
Protein name | Very low-density lipoprotein receptor (VLDL receptor) (VLDL-R) Very low density lipoprotein receptor |
Synonyms | hCG_27927 |
Description | FUNCTION: Multifunctional cell surface receptor that binds VLDL and transports it into cells by endocytosis and therefore plays an important role in energy metabolism. Binds also to a wide range of other molecules including Reelin/RELN or apolipoprotein E/APOE-containing ligands as well as clusterin/CLU . In the off-state of the pathway, forms homooligomers or heterooligomers with LRP8 . Upon binding to ligands, homooligomers are rearranged to higher order receptor clusters that transmit the extracellular RELN signal to intracellular signaling processes by binding to DAB1 . This interaction results in phosphorylation of DAB1 leading to the ultimate cell responses required for the correct positioning of newly generated neurons. Later, mediates a stop signal for migrating neurons, preventing them from entering the marginal zone (By similarity). .; FUNCTION: (Microbial infection) Acts as a receptor for Semliki Forest virus. . |
Accessions | ENST00000681942.1 A0A804CHQ2 A0A7P0TA42 ENST00000681806.1 Q5VVF8 ENST00000680296.1 Q5VVF5 A0A7P0T8C1 ENST00000382100.8 [P98155-1] ENST00000382096.6 ENST00000680043.1 A0A7P0T897 A0A7P0T8F7 ENST00000681644.1 ENST00000680219.1 ENST00000681518.1 ENST00000680243.1 A0A7P0T8N6 A0A7P0Z477 A0A7P0TAL1 ENST00000382099.3 ENST00000680891.1 ENST00000681876.1 A0A7P0T9P7 A0A7P0TB10 ENST00000681306.1 [P98155-2] P98155 ENST00000681618.1 A0A7P0T8N9 A0A7P0TBI2 ENST00000680746.1 |