Name | Number of supported studies | Average coverage | |
---|---|---|---|
pancreatic A cell | 4 studies | 82% ± 18% | |
type B pancreatic cell | 3 studies | 57% ± 13% | |
GABAergic neuron | 3 studies | 27% ± 10% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
pancreas | 4 studies | 46% ± 24% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 88% | 3889.16 | 2319 / 2642 | 88% | 114.26 | 618 / 705 |
pancreas | 78% | 888.49 | 255 / 328 | 61% | 34.06 | 108 / 178 |
adrenal gland | 25% | 277.94 | 64 / 258 | 81% | 533.13 | 187 / 230 |
skin | 13% | 50.31 | 236 / 1809 | 79% | 596.39 | 373 / 472 |
stomach | 20% | 89.69 | 73 / 359 | 26% | 6.05 | 73 / 286 |
eye | 0% | 0 | 0 / 0 | 44% | 49.68 | 35 / 80 |
intestine | 3% | 7.20 | 28 / 966 | 27% | 9.67 | 144 / 527 |
kidney | 22% | 251.74 | 20 / 89 | 6% | 17.70 | 58 / 901 |
lymph node | 0% | 0 | 0 / 0 | 28% | 2.10 | 8 / 29 |
uterus | 3% | 16.01 | 5 / 170 | 13% | 6.27 | 59 / 459 |
thymus | 7% | 46.88 | 45 / 653 | 9% | 10.22 | 52 / 605 |
bladder | 0% | 0 | 0 / 21 | 12% | 1.67 | 62 / 504 |
prostate | 1% | 1.83 | 2 / 245 | 10% | 1.18 | 50 / 502 |
esophagus | 1% | 3.59 | 20 / 1445 | 9% | 2.98 | 17 / 183 |
lung | 0% | 1.53 | 1 / 578 | 8% | 5.34 | 97 / 1155 |
breast | 0% | 0 | 0 / 459 | 8% | 1.65 | 94 / 1118 |
liver | 0% | 0 | 0 / 226 | 3% | 0.60 | 13 / 406 |
ovary | 0% | 0 | 0 / 180 | 3% | 2.60 | 13 / 430 |
tonsil | 0% | 0 | 0 / 0 | 2% | 2.85 | 1 / 45 |
adipose | 0% | 0.70 | 3 / 1204 | 0% | 0 | 0 / 0 |
muscle | 0% | 1.13 | 1 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0.34 | 1 / 929 | 0% | 0 | 0 / 0 |
blood vessel | 0% | 0.29 | 1 / 1335 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
heart | 0% | 0 | 0 / 861 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0006091 | Biological process | generation of precursor metabolites and energy |
GO_0001541 | Biological process | ovarian follicle development |
GO_0007165 | Biological process | signal transduction |
GO_0032868 | Biological process | response to insulin |
GO_0002021 | Biological process | response to dietary excess |
GO_0099538 | Biological process | synaptic signaling via neuropeptide |
GO_0051591 | Biological process | response to cAMP |
GO_0048167 | Biological process | regulation of synaptic plasticity |
GO_0048168 | Biological process | regulation of neuronal synaptic plasticity |
GO_0009409 | Biological process | response to cold |
GO_0019953 | Biological process | sexual reproduction |
GO_0042742 | Biological process | defense response to bacterium |
GO_0033500 | Biological process | carbohydrate homeostasis |
GO_0030073 | Biological process | insulin secretion |
GO_0042593 | Biological process | glucose homeostasis |
GO_0098978 | Cellular component | glutamatergic synapse |
GO_0005615 | Cellular component | extracellular space |
GO_0031410 | Cellular component | cytoplasmic vesicle |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0043025 | Cellular component | neuronal cell body |
GO_0005788 | Cellular component | endoplasmic reticulum lumen |
GO_0030133 | Cellular component | transport vesicle |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0005179 | Molecular function | hormone activity |
GO_0008083 | Molecular function | growth factor activity |
GO_0003674 | Molecular function | molecular_function |
GO_0005184 | Molecular function | neuropeptide hormone activity |
Gene name | VGF |
Protein name | VGF protein Neurosecretory protein VGF [Cleaved into: Neuroendocrine regulatory peptide-1 (NERP-1); Neuroendocrine regulatory peptide-2 (NERP-2); VGF-derived peptide TLQP-21; VGF-derived peptide TLQP-62; Antimicrobial peptide VGF[554-577]] |
Synonyms | |
Description | FUNCTION: [Neurosecretory protein VGF]: Secreted polyprotein that is packaged and proteolytically processed by prohormone convertases PCSK1 and PCSK2 in a cell-type-specific manner (By similarity). VGF and peptides derived from its processing play many roles in neurogenesis and neuroplasticity associated with learning, memory, depression and chronic pain (By similarity). .; FUNCTION: [Neuroendocrine regulatory peptide-1]: Plays a role in the control of body fluid homeostasis by regulating vasopressin release. Suppresses presynaptic glutamatergic neurons connected to vasopressin neurons. .; FUNCTION: [Neuroendocrine regulatory peptide-2]: Plays a role in the control of body fluid homeostasis by regulating vasopressin release. Activates GABAergic interneurons which are inhibitory neurons of the nervous system and thereby suppresses presynaptic glutamatergic neurons (By similarity). Stimulates also feeding behavior in an orexin-dependent manner in the hypothalamus (By similarity). Functions as a positive regulator for the activation of orexin neurons resulting in elevated gastric acid secretion and gastric emptying (By similarity). .; FUNCTION: [VGF-derived peptide TLQP-21]: Secreted multifunctional neuropeptide that binds to different cell receptors and thereby plays multiple physiological roles including modulation of energy expenditure, pain, response to stress, gastric regulation, glucose homeostasis as well as lipolysis (By similarity). Activates the G-protein-coupled receptor C3AR1 via a folding-upon-binding mechanism leading to enhanced lipolysis in adipocytes (By similarity). Interacts with C1QBP receptor in macrophages and microglia causing increased levels of intracellular calcium and hypersensitivity (By similarity). .; FUNCTION: [VGF-derived peptide TLQP-62]: Plays a role in the regulation of memory formation and depression-related behaviors potentially by influencing synaptic plasticity and neurogenesis. Induces acute and transient activation of the NTRK2/TRKB receptor and subsequent CREB phosphorylation (By similarity). Induces also insulin secretion in insulinoma cells by increasing intracellular calcium mobilization (By similarity). .; FUNCTION: [Antimicrobial peptide VGF[554-577]]: Has bactericidal activity against M. luteus, and antifungal activity against P. Pastoris. . |
Accessions | ENST00000445482.2 O15240 ENST00000249330.3 Q05BJ3 |