Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte | 7 studies | 24% ± 7% | |
endothelial cell | 3 studies | 22% ± 6% | |
epithelial cell | 3 studies | 24% ± 5% | |
GABAergic neuron | 3 studies | 31% ± 3% | |
glutamatergic neuron | 3 studies | 37% ± 1% | |
transit amplifying cell | 3 studies | 23% ± 5% | |
astrocyte | 3 studies | 31% ± 12% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 32% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1529.60 | 1445 / 1445 | 100% | 17.53 | 183 / 183 |
breast | 100% | 2104.52 | 459 / 459 | 99% | 16.51 | 1108 / 1118 |
lung | 100% | 1523.75 | 576 / 578 | 99% | 13.27 | 1142 / 1155 |
skin | 100% | 2645.63 | 1809 / 1809 | 99% | 21.22 | 465 / 472 |
stomach | 100% | 1211.19 | 359 / 359 | 98% | 13.80 | 281 / 286 |
intestine | 100% | 1485.73 | 964 / 966 | 98% | 13.62 | 515 / 527 |
brain | 98% | 862.40 | 2594 / 2642 | 99% | 9.51 | 700 / 705 |
bladder | 100% | 1849.33 | 21 / 21 | 97% | 12.17 | 491 / 504 |
prostate | 100% | 1590.27 | 245 / 245 | 97% | 9.59 | 486 / 502 |
uterus | 100% | 2055.11 | 170 / 170 | 97% | 12.02 | 443 / 459 |
pancreas | 100% | 1250.23 | 327 / 328 | 97% | 8.46 | 172 / 178 |
thymus | 100% | 1581.03 | 653 / 653 | 96% | 8.21 | 582 / 605 |
kidney | 99% | 1067.90 | 88 / 89 | 97% | 11.36 | 870 / 901 |
adrenal gland | 100% | 1913.11 | 258 / 258 | 91% | 8.64 | 209 / 230 |
ovary | 100% | 2404.89 | 180 / 180 | 90% | 7.26 | 385 / 430 |
liver | 99% | 703.55 | 223 / 226 | 71% | 4.95 | 290 / 406 |
adipose | 100% | 2014.29 | 1204 / 1204 | 0% | 0 | 0 / 0 |
spleen | 100% | 1622.22 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 14.15 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 5.65 | 1 / 1 |
muscle | 100% | 1418.23 | 802 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1399.62 | 1333 / 1335 | 0% | 0 | 0 / 0 |
heart | 96% | 919.68 | 824 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 90% | 9.10 | 72 / 80 |
lymph node | 0% | 0 | 0 / 0 | 90% | 11.14 | 26 / 29 |
peripheral blood | 33% | 804.68 | 305 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000447 | Biological process | endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
GO_0008285 | Biological process | negative regulation of cell population proliferation |
GO_0006364 | Biological process | rRNA processing |
GO_0000480 | Biological process | endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
GO_0000472 | Biological process | endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
GO_0042274 | Biological process | ribosomal small subunit biogenesis |
GO_0005730 | Cellular component | nucleolus |
GO_0030686 | Cellular component | 90S preribosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0030688 | Cellular component | preribosome, small subunit precursor |
GO_0005886 | Cellular component | plasma membrane |
GO_0032040 | Cellular component | small-subunit processome |
GO_0005737 | Cellular component | cytoplasm |
GO_0005515 | Molecular function | protein binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | UTP20 |
Protein name | Small subunit processome component 20 homolog (Down-regulated in metastasis protein) (Novel nucleolar protein 73) (NNP73) (Protein Key-1A6) |
Synonyms | DRIM |
Description | FUNCTION: Part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted degradation of pre-ribosomal RNA by the RNA exosome. Involved in 18S pre-rRNA processing. Associates with U3 snoRNA. . |
Accessions | O75691 ENST00000261637.5 |